View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21235_high_9 (Length: 582)
Name: NF21235_high_9
Description: NF21235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21235_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 16 - 437
Target Start/End: Complemental strand, 34408410 - 34407988
Alignment:
| Q |
16 |
atcaagcacgggtacgagaatgctcgaactcgttgggttcaggatcgnnnnnnnnnnnnngtatctttgcccctgttgtcatgcctactaagcgcctgat |
115 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||| |
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| T |
34408410 |
atcaaggacgggtacgagaatgctcgaactcgttgggttcaggaacgaaaaaggaaaaaagtatctttgcccctgttgtcatgcctactaagtgcctgat |
34408311 |
T |
|
| Q |
116 |
ggacagcctgaaccttgtactgttgcagttttatcatgtttttagattgcaatggttatgtctcttcatatacttgattaagagatgtagtttcattgtc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34408310 |
ggacagcctgaaccttgtactgttgcagttttatcatgtttttagattgcaatggttatgtctcttcatatacttgattaagagatgtagtttcattgtc |
34408211 |
T |
|
| Q |
216 |
atta-tggattaaaagtgaacaaacgcaactcttgattcaaaaatttgatcatatatgatagtgaccattggtgttacttttcatatgtgaaatagttgt |
314 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34408210 |
attactggattaaaagtgaacaaacacaactcttgattcaaaaatttgatcatatatgatagtgaccattggtgttacttttcatatgtgaaatggttgt |
34408111 |
T |
|
| Q |
315 |
gtcatgtattataaatacatggttcttgcaagtcaaaaagtccacaaattttgtcattgttagatgctaattctttgtcattttcaatttctaaatcatc |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
34408110 |
gtcatgtattataaatacatggttcttgcaagtcaaaaagtccacaaattttgtcattgttagatgctaattgtttgtcattttcaatttctaaatcatc |
34408011 |
T |
|
| Q |
415 |
cttctcttttgtaaagcatgagt |
437 |
Q |
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| T |
34408010 |
cttctcttttgtaaagcatgagt |
34407988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 413 - 565
Target Start/End: Complemental strand, 34407988 - 34407836
Alignment:
| Q |
413 |
tccttctcttttgtaaagcatgagtgaagtgtatgaaacatttttctgtaaactattattgaaacatatgcttagtgtgtttaagcaaataacattaagg |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34407988 |
tccttctcttttgtaaagcatgagtgaagtgtatgaaacatttttctgtaaactattattgaaacatatgcttagtgtgtttaagcaaataacattaagg |
34407889 |
T |
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| Q |
513 |
atttttaaagtattttgaacgagattcacaatatacccccttgaatccaatat |
565 |
Q |
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| T |
34407888 |
atttttaaagtattttcaacgagattcacaatatacccctttgaatccaatat |
34407836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 418 - 476
Target Start/End: Complemental strand, 19644886 - 19644828
Alignment:
| Q |
418 |
ctcttttgtaaagcatgagtgaagtgtatgaaacatttttctgtaaactattattgaaa |
476 |
Q |
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| T |
19644886 |
ctcttttctaatgcatgagtaaagtgtaggaaacatttttttgtaaactactattgaaa |
19644828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 404 - 476
Target Start/End: Complemental strand, 31347993 - 31347921
Alignment:
| Q |
404 |
tctaaatcatccttctcttttgtaaagcatgagtgaagtgtatgaaacatttttctgtaaactattattgaaa |
476 |
Q |
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| T |
31347993 |
tctaaatcattctactcgtctctaatgcatgagtgaagtgtaggaaacattcttcagtaaattattatcgaaa |
31347921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 227 - 337
Target Start/End: Complemental strand, 23920641 - 23920527
Alignment:
| Q |
227 |
aaagtgaacaaacgcaactcttgattcaaaaatttgatcatatatgatagtgaccattggt-----gttacttttcatatgtgaaatagttgtgtcatgt |
321 |
Q |
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||||||||||||||||||||||| ||||||||| |||||||||||||| || ||| ||||| |||||||||||| ||| ||| | |||||| ||| |
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| T |
23920641 |
aaagtgaacaaacgcaactcttgtttcaaaaatctgatcatatatgattgttacccttggttaaaggttacttttcatgtgttaaa-cgatgtgtcttgt |
23920543 |
T |
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| Q |
322 |
attataaatacatggt |
337 |
Q |
| |
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|||||||||||||||| |
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| T |
23920542 |
attataaatacatggt |
23920527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 227 - 337
Target Start/End: Original strand, 23908485 - 23908599
Alignment:
| Q |
227 |
aaagtgaacaaacgcaactcttgattcaaaaatttgatcatatatgatagtgaccattggt-----gttacttttcatatgtgaaatagttgtgtcatgt |
321 |
Q |
| |
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|||||||||||||| |||||||| ||||||||| |||||||||||||| || ||| ||||| |||||||||||| ||| ||| | |||||| ||| |
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| T |
23908485 |
aaagtgaacaaacgtaactcttgtttcaaaaatatgatcatatatgattgttacccttggttaaaggttacttttcatgtgttaaa-cgatgtgtcttgt |
23908583 |
T |
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| Q |
322 |
attataaatacatggt |
337 |
Q |
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||||| |||||||||| |
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| T |
23908584 |
attatgaatacatggt |
23908599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 404 - 487
Target Start/End: Complemental strand, 31892926 - 31892843
Alignment:
| Q |
404 |
tctaaatcatccttctcttttgtaaagcatgagtgaagtgtatgaaacatttttctgtaaactattattgaaacatatgcttag |
487 |
Q |
| |
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|||||||| |||| ||||| | ||| ||| |||||||||||| |||||||| |||| ||||||||||| |||| ||| |||||| |
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| T |
31892926 |
tctaaatcctcctcctcttctctaatgcacgagtgaagtgtaggaaacattcttctataaactattatcgaaagatacgcttag |
31892843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 383 - 531
Target Start/End: Original strand, 33224259 - 33224409
Alignment:
| Q |
383 |
aattctttgtcattttcaatttctaaatcat---ccttctcttttgtaaagcatgagtgaagtgtatgaaacatttttctgtaaactattattgaaacat |
479 |
Q |
| |
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|||||| | ||||||||||| |||||||||| |||| | || | ||| ||||||||||||| || ||||||||||| ||||||||| || |||| || |
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| T |
33224259 |
aattctctatcattttcaatctctaaatcattatccttattttctataatgcatgagtgaagtataggaaacatttttttgtaaactaataccgaaagat |
33224358 |
T |
|
| Q |
480 |
atgcttagtgtgtttaagcaaataacattaaggatttttaaagtattttgaa |
531 |
Q |
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| T |
33224359 |
acccttagtgtgcttgtgcaaacaaaattaagg-tttcaaaagtattttgaa |
33224409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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