View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21235_low_13 (Length: 530)

Name: NF21235_low_13
Description: NF21235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21235_low_13
NF21235_low_13
[»] chr7 (27 HSPs)
chr7 (1-353)||(38917089-38917432)
chr7 (408-510)||(38917487-38917589)
chr7 (7-84)||(26199509-26199587)
chr7 (5-86)||(43215182-43215264)
chr7 (7-84)||(22760863-22760941)
chr7 (7-99)||(39499703-39499795)
chr7 (7-86)||(26459406-26459486)
chr7 (12-99)||(41519247-41519335)
chr7 (7-81)||(24513797-24513872)
chr7 (6-87)||(17041007-17041089)
chr7 (7-84)||(20335829-20335907)
chr7 (6-102)||(23552117-23552215)
chr7 (13-84)||(21877814-21877886)
chr7 (7-85)||(23301599-23301678)
chr7 (6-99)||(23945860-23945955)
chr7 (48-98)||(7309398-7309448)
chr7 (13-47)||(42477104-42477138)
chr7 (24-84)||(7499922-7499983)
chr7 (7-79)||(7801180-7801253)
chr7 (6-86)||(14058252-14058333)
chr7 (6-86)||(14368280-14368361)
chr7 (5-46)||(24621813-24621854)
chr7 (6-86)||(45709704-45709785)
chr7 (6-86)||(13106778-13106858)
chr7 (7-86)||(33869441-33869521)
chr7 (28-98)||(45229008-45229080)
chr7 (264-308)||(47813416-47813460)
[»] chr5 (14 HSPs)
chr5 (7-86)||(16773807-16773887)
chr5 (6-86)||(26078047-26078128)
chr5 (6-82)||(30109308-30109385)
chr5 (6-97)||(30883182-30883275)
chr5 (6-86)||(34984805-34984886)
chr5 (6-85)||(43241679-43241759)
chr5 (6-97)||(16436617-16436708)
chr5 (6-76)||(40461619-40461690)
chr5 (27-77)||(19949621-19949671)
chr5 (7-44)||(3252328-3252365)
chr5 (7-86)||(14495801-14495881)
chr5 (7-86)||(21549133-21549213)
chr5 (7-86)||(25627057-25627137)
chr5 (48-84)||(35360084-35360120)
[»] chr3 (24 HSPs)
chr3 (7-99)||(14186648-14186741)
chr3 (8-84)||(47454615-47454692)
chr3 (5-84)||(5499405-5499485)
chr3 (7-86)||(37788461-37788541)
chr3 (6-84)||(8368797-8368876)
chr3 (6-99)||(36720380-36720475)
chr3 (6-85)||(19154630-19154710)
chr3 (48-99)||(52769965-52770017)
chr3 (7-85)||(2597217-2597296)
chr3 (6-99)||(32651420-32651514)
chr3 (5-86)||(10499105-10499187)
chr3 (18-86)||(4844507-4844576)
chr3 (18-86)||(4870203-4870272)
chr3 (6-82)||(8051213-8051290)
chr3 (7-86)||(10445135-10445216)
chr3 (9-61)||(10682964-10683017)
chr3 (27-87)||(21960571-21960632)
chr3 (6-35)||(24481580-24481609)
chr3 (10-86)||(53412948-53413025)
chr3 (18-81)||(12761523-12761587)
chr3 (7-86)||(16354888-16354968)
chr3 (7-86)||(28703400-28703480)
chr3 (27-86)||(29563920-29563980)
chr3 (6-38)||(34622567-34622599)
[»] chr2 (22 HSPs)
chr2 (6-85)||(35710390-35710470)
chr2 (4-86)||(3001376-3001459)
chr2 (7-82)||(12994376-12994452)
chr2 (7-86)||(19244109-19244189)
chr2 (6-86)||(4060210-4060291)
chr2 (6-98)||(29503270-29503363)
chr2 (7-86)||(40416386-40416466)
chr2 (6-84)||(37480074-37480153)
chr2 (6-84)||(39714991-39715070)
chr2 (7-85)||(42327392-42327471)
chr2 (47-99)||(33582014-33582067)
chr2 (7-43)||(5147719-5147755)
chr2 (7-82)||(42860348-42860424)
chr2 (18-84)||(21213780-21213847)
chr2 (7-81)||(28846691-28846766)
chr2 (6-86)||(19322767-19322848)
chr2 (6-82)||(34041588-34041665)
chr2 (7-86)||(13803495-13803575)
chr2 (6-85)||(30808644-30808724)
chr2 (7-43)||(35916086-35916122)
chr2 (6-81)||(38854463-38854539)
chr2 (62-101)||(39764989-39765029)
[»] chr8 (10 HSPs)
chr8 (9-99)||(3624582-3624673)
chr8 (7-86)||(968362-968442)
chr8 (6-96)||(19703472-19703564)
chr8 (6-84)||(16852339-16852418)
chr8 (7-86)||(18540298-18540378)
chr8 (6-86)||(8484998-8485079)
chr8 (5-61)||(17727447-17727504)
chr8 (18-84)||(18546360-18546427)
chr8 (4-81)||(34966851-34966929)
chr8 (6-86)||(35641897-35641978)
[»] chr6 (15 HSPs)
chr6 (5-86)||(33549102-33549184)
chr6 (18-99)||(3715463-3715546)
chr6 (27-84)||(346551-346608)
chr6 (6-99)||(12234489-12234584)
chr6 (7-97)||(14557962-14558053)
chr6 (10-86)||(4105051-4105131)
chr6 (7-41)||(22995153-22995187)
chr6 (7-41)||(23793213-23793247)
chr6 (7-80)||(32439805-32439879)
chr6 (6-86)||(12188299-12188380)
chr6 (27-86)||(6385882-6385942)
chr6 (7-97)||(11423566-11423658)
chr6 (9-41)||(22995077-22995109)
chr6 (9-41)||(23793291-23793323)
chr6 (13-84)||(34444809-34444881)
[»] scaffold0258 (1 HSPs)
scaffold0258 (7-86)||(15319-15399)
[»] chr1 (24 HSPs)
chr1 (11-86)||(9224779-9224855)
chr1 (11-86)||(14787332-14787408)
chr1 (4-86)||(51814491-51814574)
chr1 (7-98)||(2219972-2220065)
chr1 (5-84)||(25297770-25297850)
chr1 (280-347)||(16138143-16138210)
chr1 (11-99)||(17745238-17745328)
chr1 (7-99)||(50901581-50901675)
chr1 (6-47)||(34460945-34460986)
chr1 (280-347)||(16127053-16127120)
chr1 (277-344)||(33731163-33731230)
chr1 (7-57)||(38978967-38979018)
chr1 (7-84)||(19528325-19528403)
chr1 (4-77)||(29817672-29817746)
chr1 (6-83)||(40257398-40257476)
chr1 (25-86)||(50919972-50920034)
chr1 (27-84)||(52029935-52029993)
chr1 (6-86)||(8177178-8177259)
chr1 (7-98)||(11068826-11068919)
chr1 (6-86)||(36371469-36371550)
chr1 (7-86)||(9165191-9165271)
chr1 (10-85)||(15786317-15786393)
chr1 (27-86)||(28411350-28411410)
chr1 (7-97)||(44961765-44961857)
[»] chr4 (19 HSPs)
chr4 (7-99)||(47044717-47044810)
chr4 (7-86)||(37109347-37109427)
chr4 (6-99)||(21660126-21660221)
chr4 (6-99)||(21668890-21668985)
chr4 (7-99)||(46545711-46545805)
chr4 (11-83)||(13901746-13901819)
chr4 (28-84)||(19112929-19112986)
chr4 (10-86)||(52254400-52254477)
chr4 (7-85)||(3780657-3780736)
chr4 (6-99)||(7949436-7949531)
chr4 (11-85)||(43623441-43623516)
chr4 (14-86)||(306306-306379)
chr4 (10-86)||(7292794-7292871)
chr4 (7-84)||(19229206-19229283)
chr4 (47-99)||(47386773-47386826)
chr4 (7-98)||(51948480-51948573)
chr4 (7-86)||(1730485-1730565)
chr4 (7-97)||(8306485-8306577)
chr4 (18-85)||(30557267-30557335)
[»] scaffold0118 (1 HSPs)
scaffold0118 (7-86)||(41629-41709)
[»] scaffold0211 (1 HSPs)
scaffold0211 (7-86)||(24053-24133)
[»] scaffold0006 (1 HSPs)
scaffold0006 (18-99)||(162991-163074)
[»] scaffold0008 (1 HSPs)
scaffold0008 (47-98)||(49347-49399)


Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 38917089 - 38917432
Alignment:
Q  1 aggtaaaacccacttgagttggtctagtggtattgacttgagacctagagtgtgcttctctttgaggtctcaggttcgattctctcagtgtcaatttagc 100  Q
    |||| ||||||||||||||||||||||||||||| ||||||||| |||| |||||||||| |||| |||||| |||||||||| ||||||||||||||||    
T  38917089 aggtgaaacccacttgagttggtctagtggtattaacttgagacttagaatgtgcttctccttgaagtctcaagttcgattctttcagtgtcaatttagc 38917188  T
Q  101 ttattcnnnnnnntattaggtcgggtgaaagaaacttatgtaaaataaaaatgnnnnnnngtctaattttggttaacttagttaatgaatattacaaaat 200  Q
    ||||||       ||||||||||| ||||||||||||||||||||||||||||       |||||||||||||||         ||||||||||||||||    
T  38917189 ttattcaaaaaaatattaggtcggatgaaagaaacttatgtaaaataaaaatgtttttttgtctaattttggtta---------atgaatattacaaaat 38917279  T
Q  201 caagcatgaatatagagcatgattttgttgtgcaaacatttatttaatggtttaatgatgatgcagatggtcaactattgcagcaagattacccggacga 300  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38917280 caagcatgaatatagagcatgattttgttgtgcaaatatttatttaatggtttaatgatgatgcagatggtcaactattgcagcaagattacccggacga 38917379  T
Q  301 acagataacgagataaaaaatgtatggcacacccatttgaagaaaaggctgcc 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38917380 acagataacgagataaaaaatgtatggcacacccatttgaagaaaaggctgcc 38917432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 408 - 510
Target Start/End: Original strand, 38917487 - 38917589
Alignment:
Q  408 gttggactttcatgtcgacgcctccaaatcagaccaagacaccaaacaagaacaacatcatgaggatgataggccacagtgttctagtgacatgtcatca 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  38917487 gttggactttcatgtcgacgcctccaaatcagaccaagacaccaaacaagaacaacatcatgaggatgataggccacaatgttctagtgacatgtcatca 38917586  T
Q  508 cat 510  Q
    |||    
T  38917587 cat 38917589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 26199509 - 26199587
Alignment:
Q  7 aacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctc 84  Q
    |||||||||||||||| |||||||||||| |||| ||||| ||| ||| || ||||||||| |||||||||||||||||    
T  26199509 aacccacttgagttggcctagtggtattggcttgggacctgagaatgtactcctctttgagatctcaggttcgattctc 26199587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 5 - 86
Target Start/End: Original strand, 43215182 - 43215264
Alignment:
Q  5 aaaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 86  Q
    |||||||||||| |||||||||||||||||| |||| |||||  ||||||||| ||| |  ||||||||||||||||||||||    
T  43215182 aaaacccacttgggttggtctagtggtattggcttgggacctcggagtgtgctcctcctcaaggtctcaggttcgattctctc 43215264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 22760863 - 22760941
Alignment:
Q  7 aacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctc 84  Q
    |||||||||| |||||||| |||||||||||||| |||||  ||||||||| ||| |  ||||||||||||||||||||    
T  22760863 aacccacttgggttggtctggtggtattgacttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctc 22760941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 99
Target Start/End: Complemental strand, 39499795 - 39499703
Alignment:
Q  7 aacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctcagtgtcaatttag 99  Q
    |||||||||| ||||| |||||||||||| |||| |||||  ||||||| | |||||| |||||||| |||||||||| || ||||||||||||    
T  39499795 aacccacttgggttggcctagtggtattggcttgggacctgtgagtgtgttcctctttaaggtctcatgttcgattctttc-gtgtcaatttag 39499703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 26459486 - 26459406
Alignment:
Q  7 aacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 86  Q
    |||||||||| ||||| |||||||||||| |||| |||||  ||||||||| ||| |  ||||||||||||||||||||||    
T  26459486 aacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctctc 26459406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 41519335 - 41519247
Alignment:
Q  12 acttgagttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctctcagtgtcaatttag 99  Q
    ||||| ||||| ||||||||||||||||| ||  ||| |||||||| ||| |  |||||||||||||| ||||||| ||||||||||||    
T  41519335 acttgggttggcctagtggtattgacttgggatttaggagtgtgctcctcctcaaggtctcaggttcgcttctctctgtgtcaatttag 41519247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 24513797 - 24513872
Alignment:
Q  7 aacccacttgagttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgatt 81  Q
    |||||||||| ||||| |||||||||||| |||||||  | | ||||| |||||| ||||||||||||||||||||    
T  24513797 aacccacttgggttggcctagtggtattggcttgagatttgggagtgtacttctccttgaggtctcaggttcgatt 24513872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 87
Target Start/End: Complemental strand, 17041089 - 17041007
Alignment:
Q  6 aaacccacttgagttggtctagtggtattgacttgagacctaga-gtgtgcttctctttgaggtctcaggttcgattctctca 87  Q
    ||||||||||| ||||||||||||| |||| |||| || || || ||||||| ||| |  |||||||||||||||||||||||    
T  17041089 aaacccacttgggttggtctagtggcattggcttgggatctggaagtgtgctcctcctcaaggtctcaggttcgattctctca 17041007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 20335907 - 20335829
Alignment:
Q  7 aacccacttgagttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctc 84  Q
    |||||||||| |||||||||| ||||||| |||| ||| | | |||||||| ||| | |||||||||||||||||||||    
T  20335907 aacccacttgggttggtctagaggtattggcttgggacttgggagtgtgctcctcctcgaggtctcaggttcgattctc 20335829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 102
Target Start/End: Original strand, 23552117 - 23552215
Alignment:
Q  6 aaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc-agtgtcaatttagctt 102  Q
    ||||||||||| ||||| |||||| |||||||||| |||||  ||||||||| ||| |  |||||||| ||||||||||||| | || |||||||||||    
T  23552117 aaacccacttgggttggcctagtgctattgacttgggacctgggagtgtgctcctcctcaaggtctcaagttcgattctctctaatgccaatttagctt 23552215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 21877814 - 21877886
Alignment:
Q  13 cttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctc 84  Q
    |||||||||| ||||||||||||||||| |||||  ||| ||||| ||| || |||||||| |||||||||||    
T  21877814 cttgagttggcctagtggtattgacttgggacctgggagggtgctcctccttaaggtctcacgttcgattctc 21877886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 23301678 - 23301599
Alignment:
Q  7 aacccacttgagttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctct 85  Q
    |||||||||| ||||| || |||||||||||||| ||| | | |||||||| ||| ||||||||||| ||| ||||||||    
T  23301678 aacccacttgggttggcctggtggtattgacttgggacttgggagtgtgctcctccttgaggtctcaagtttgattctct 23301599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 99
Target Start/End: Original strand, 23945860 - 23945955
Alignment:
Q  6 aaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc-agtgtcaatttag 99  Q
    ||||||||||| ||||  ||| ||||||||||||   |||| ||| |||||| ||| ||||||||||||||||||| ||||| | |||||||||||    
T  23945860 aaacccacttgggttgacctaatggtattgacttagaacctgagaatgtgctcctcattgaggtctcaggttcgatcctctctaatgtcaatttag 23945955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 7309398 - 7309448
Alignment:
Q  48 gagtgtgcttctctttgaggtctcaggttcgattctctcagtgtcaattta 98  Q
    ||||||||| ||| | ||||||||| ||||||||||||| |||||||||||    
T  7309398 gagtgtgctcctcctcgaggtctcaagttcgattctctccgtgtcaattta 7309448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 42477138 - 42477104
Alignment:
Q  13 cttgagttggtctagtggtattgacttgagaccta 47  Q
    |||| ||||||||||||||||||||||||||||||    
T  42477138 cttgggttggtctagtggtattgacttgagaccta 42477104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 7499983 - 7499922
Alignment:
Q  24 ctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctc 84  Q
    |||||| ||||| |||| ||||| ||||| |||| ||||| |||||||||||||||||||||    
T  7499983 ctagtgatattggcttgggacctgagagtttgctcctcttcgaggtctcaggttcgattctc 7499922  T

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Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 79
Target Start/End: Original strand, 7801180 - 7801253
Alignment:
Q  7 aacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcga 79  Q
    ||||||||||  |||| || |||||||||||||| |||||  ||||||||| |||||  |||||||||||||||    
T  7801180 aacccacttggtttggcctggtggtattgacttgggacctgggagtgtgctcctcttcaaggtctcaggttcga 7801253  T

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Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 14058252 - 14058333
Alignment:
Q  6 aaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 86  Q
    |||||| |||||||||| || ||||||||| ||||  |||| ||||||||||  || |  ||||||||||||||||||||||    
T  14058252 aaacccgcttgagttggcctggtggtattgtcttggaacctgagagtgtgctcatcctcaaggtctcaggttcgattctctc 14058333  T

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Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 14368280 - 14368361
Alignment:
Q  6 aaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 86  Q
    |||||| |||||||||| || ||||||||| ||||  |||| ||||||||||  || |  ||||||||||||||||||||||    
T  14368280 aaacccgcttgagttggcctggtggtattgtcttggaacctgagagtgtgctcatcctcaaggtctcaggttcgattctctc 14368361  T

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Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 24621813 - 24621854
Alignment:
Q  5 aaaacccacttgagttggtctagtggtattgacttgagacct 46  Q
    |||||||| |||||||||| ||||| ||||||||||||||||    
T  24621813 aaaacccatttgagttggtttagtgatattgacttgagacct 24621854  T

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Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 45709785 - 45709704
Alignment:
Q  6 aaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 86  Q
    ||||||| ||| ||||| |||||||||||  |||| || || |||||||||| ||| | |||||||||||||||||| ||||    
T  45709785 aaacccatttgggttggcctagtggtattagcttgggatctgagagtgtgctcctcctcgaggtctcaggttcgattatctc 45709704  T

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Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 13106858 - 13106778
Alignment:
Q  6 aaacccacttgagttggtctagtggtattgacttgagacctagagtgtgcttctctttgaggtctcaggttcgattctctc 86  Q
    ||||||| ||| |||| |||||| ||||||| ||| || || |||||| || ||| |  ||||||||||||||||||||||    
T  13106858 aaacccagttgggttgatctagtagtattgatttgggatctggagtgtactcctcctcaaggtctcaggttcgattctctc 13106778  T

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Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 33869521 - 33869441
Alignment:
Q  7 aacccacttgagttggtctagtggtattgacttgagacctaga-gtgtgcttctctttgaggtctcaggttcgattctctc 86  Q
    |||||||||| ||||| ||||| |||||| |||||||||| || ||||||| ||  |  ||||||| ||||||||||||||    
T  33869521 aacccacttgggttggcctagtagtattggcttgagacctggaagtgtgctccttctcaaggtctctggttcgattctctc 33869441  T

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Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 45229080 - 45229008
Alignment:
Q  28 tggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctct-cagtgtcaattta 98  Q
    ||||||||  ||| ||||||| |||||||||||  ||||||| | |||||||||||||| |||||||||||||    
T  45229080 tggtattggtttgggacctaggagtgtgcttcttcttgaggttttaggttcgattctctccagtgtcaattta 45229008  T

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Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 308
Target Start/End: Original strand, 47813416 - 47813460
Alignment:
Q  264 cagatggtcaactattgcagcaagattacccggacgaacagataa 308  Q
    |||||||||  | ||||||||||||||||| ||||||||||||||    
T  47813416 cagatggtctgcaattgcagcaagattaccaggacgaacagataa 47813460  T

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Target: chr5 (Bit Score: 49; Significance: 9e-19; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 7 - 86
Target Start/End: Original strand, 16773807 - 16773887
Alignment:
Q  7 aacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 86  Q
    ||||||||||||||||||| |||||||||||||| |||||  ||||||||| ||| | |||||||||||||||||||||||    
T  16773807 aacccacttgagttggtctggtggtattgacttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctc 16773887  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 26078128 - 26078047
Alignment:
Q  6 aaacccacttgagttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctctc 86  Q
    ||||||||||| ||||| ||||||||||||  ||| ||| | | ||| ||||||||||  ||||||||||||||||||||||    
T  26078128 aaacccacttgggttggcctagtggtattggtttgggacttgggagtatgcttctcttcaaggtctcaggttcgattctctc 26078047  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 6 - 82
Target Start/End: Complemental strand, 30109385 - 30109308
Alignment:
Q  6 aaacccacttgagttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattc 82  Q
    ||||||||||| |||||  | ||||||||| |||| ||||| | |||||||| ||| |||||||||||||||||||||    
T  30109385 aaacccacttgggttggcttggtggtattggcttgtgacctgggagtgtgctcctccttgaggtctcaggttcgattc 30109308  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 30883275 - 30883182
Alignment:
Q  6 aaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctc-tcagtgtcaattt 97  Q
    ||||||||||| |||||||||||||||||| |||| |||||  ||||||||| ||| |  |||||||| |||| ||||||  ||||||||||||    
T  30883275 aaacccacttgggttggtctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaagttcaattctcaccagtgtcaattt 30883182  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 34984805 - 34984886
Alignment:
Q  6 aaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 86  Q
    ||||||||||| |||||||||||||||||| ||||  ||||  ||||||||| ||| |  |||||| |||||||||||||||    
T  34984805 aaacccacttgggttggtctagtggtattggcttggaacctgggagtgtgctcctcctcaaggtcttaggttcgattctctc 34984886  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 43241759 - 43241679
Alignment:
Q  6 aaacccacttgagttggtctagtggtattgacttgaga-cctagagtgtgcttctctttgaggtctcaggttcgattctct 85  Q
    |||| |||||| ||||||||||||||||||||||| || | | ||||||||   || |||||||||||||||| |||||||    
T  43241759 aaactcacttgggttggtctagtggtattgacttgggatcttggagtgtgcccttccttgaggtctcaggttcaattctct 43241679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 16436617 - 16436708
Alignment:
Q  6 aaacccacttgagttggtctagtggtattgacttgagacctagagtgtgcttctctttgaggtctcaggttcgattctctcagtgtcaattt 97  Q
    |||| |||||| ||||| |||||||||||| |||| ||| | ||||||||| ||| |  |||||||| |||||||| || |||| |||||||    
T  16436617 aaactcacttgggttggcctagtggtattggcttgggacttggagtgtgctcctcctcaaggtctcatgttcgattttcacagtatcaattt 16436708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 40461690 - 40461619
Alignment:
Q  6 aaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggtt 76  Q
    ||||||||||| |||| ||| |||||||| ||||||||| | |||||||||||||| |  ||||||||||||    
T  40461690 aaacccacttgggttgatctggtggtattaacttgagacttgagagtgtgcttctcctcaaggtctcaggtt 40461619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 19949671 - 19949621
Alignment:
Q  27 gtggtattgacttgagacctagagtgtgcttctctttgaggtctcaggttc 77  Q
    ||||||||||||||||| |||||||||||| ||| | ||| ||||||||||    
T  19949671 gtggtattgacttgagatctagagtgtgctcctcctcgagctctcaggttc 19949621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 3252365 - 3252328
Alignment:
Q  7 aacccacttgagttggtctagtggtattgacttgagac 44  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  3252365 aacccacttgggttggcctagtggtattgacttgagac 3252328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 14495881 - 14495801
Alignment:
Q  7 aacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 86  Q
    |||||| ||| |||||||| |||||||||||||| || ||  ||||||||| ||| | |||||||||| || |||||||||    
T  14495881 aacccatttgggttggtctggtggtattgacttgggatctgggagtgtgctcctcctcgaggtctcagatttgattctctc 14495801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 21549213 - 21549133
Alignment:
Q  7 aacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 86  Q
    |||||||||| ||||| |||||||||||| |||| |||||  ||||||||| ||| || | |||||| |||||||| ||||    
T  21549213 aacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctccttaaagtctcaagttcgattttctc 21549133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 86
Target Start/End: Original strand, 25627057 - 25627137
Alignment:
Q  7 aacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 86  Q
    |||||||||| ||||| |||||||||||| ||||  || |  ||||||||| ||| |  ||||||||||||||||||||||    
T  25627057 aacccacttgggttggcctagtggtattggcttggaacttgggagtgtgctcctcctcaaggtctcaggttcgattctctc 25627137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 35360120 - 35360084
Alignment:
Q  48 gagtgtgcttctctttgaggtctcaggttcgattctc 84  Q
    ||||||||||||| | |||||||||||||||||||||    
T  35360120 gagtgtgcttctcctcgaggtctcaggttcgattctc 35360084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 7 - 99
Target Start/End: Original strand, 14186648 - 14186741
Alignment:
Q  7 aacccacttgagttggtctagtggtattgacttgagacctagagtgtgcttctctttgaggtctcaggttcgattctct-cagtgtcaatttag 99  Q
    |||||||||| ||||| |||||||||||| |||| ||||| ||||||||| ||| |  ||||||||||||||||||||| | ||||||||||||    
T  14186648 aacccacttgggttggcctagtggtattgtcttgggacctggagtgtgctcctcctcaaggtctcaggttcgattctctccggtgtcaatttag 14186741  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 47454692 - 47454615
Alignment:
Q  8 acccacttgagttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctc 84  Q
    ||||||||| |||| ||||||||||||| ||||||| || | |||||||| ||| | |||||||||||||||||||||    
T  47454692 acccacttgggttgttctagtggtattggcttgagatcttggagtgtgctcctcctcgaggtctcaggttcgattctc 47454615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 5499485 - 5499405
Alignment:
Q  5 aaaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctc 84  Q
    |||||||||||| ||||| || ||||||||||||||||| || |||||||||| ||| || |||||| |||||| ||||||    
T  5499485 aaaacccacttgggttggcctggtggtattgacttgagatctgagagtgtgctcctccttaaggtctaaggttctattctc 5499405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 37788541 - 37788461
Alignment:
Q  7 aacccacttgagttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctctc 86  Q
    |||||||||| ||||| | |||||||||||||||  |||||| |||||||| ||| |  ||||||||||||||||||||||    
T  37788541 aacccacttgggttggcccagtggtattgacttggaacctaggagtgtgctcctcctcaaggtctcaggttcgattctctc 37788461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 6 - 84
Target Start/End: Complemental strand, 8368876 - 8368797
Alignment:
Q  6 aaacccacttgagttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctc 84  Q
    ||||||| ||||||||| |||||||||||||||||| |||| | ||||||||  || | ||||||||||||| |||||||    
T  8368876 aaacccaattgagttggcctagtggtattgacttgaaacctggtagtgtgctcatcctcgaggtctcaggtttgattctc 8368797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 6 - 99
Target Start/End: Original strand, 36720380 - 36720475
Alignment:
Q  6 aaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc-agtgtcaatttag 99  Q
    ||||||||||| |||||||| ||||||||| |||| ||  |  ||||||||| ||| | ||||| ||||||||||||||||| |||||||||||||    
T  36720380 aaacccacttgggttggtctggtggtattggcttgggatatgggagtgtgctcctcctcgaggtttcaggttcgattctctctagtgtcaatttag 36720475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 85
Target Start/End: Original strand, 19154630 - 19154710
Alignment:
Q  6 aaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctct 85  Q
    ||||||| ||| ||||| ||||| |||||| |||||| ||| |||||||||| ||| |  |||||||||||||||||||||    
T  19154630 aaacccatttgggttggcctagttgtattggcttgaggcctgagagtgtgctcctcctaaaggtctcaggttcgattctct 19154710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 99
Target Start/End: Complemental strand, 52770017 - 52769965
Alignment:
Q  48 gagtgtgcttctctttgaggtctcaggttcgattctc-tcagtgtcaatttag 99  Q
    ||||||||| ||| ||||||||||||||||||||||| | |||||||||||||    
T  52770017 gagtgtgctcctccttgaggtctcaggttcgattctctttagtgtcaatttag 52769965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 2597296 - 2597217
Alignment:
Q  7 aacccacttgagttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctct 85  Q
    |||||||||| |||||||| ||||||||| |||  ||  ||| |||||||| ||| |||||||||||||||||| |||||    
T  2597296 aacccacttgggttggtctggtggtattggcttcggatttaggagtgtgctcctccttgaggtctcaggttcgaatctct 2597217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 99
Target Start/End: Complemental strand, 32651514 - 32651420
Alignment:
Q  6 aaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc-agtgtcaatttag 99  Q
    |||||||||| |||||| |||||||||||| |||| |||||  ||||||||| ||| |  || |||||| |||||||||||| |||||||||||||    
T  32651514 aaacccactt-agttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaagatctcagattcgattctctctagtgtcaatttag 32651420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 86
Target Start/End: Complemental strand, 10499187 - 10499105
Alignment:
Q  5 aaaacccacttgagttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctctc 86  Q
    |||||||||||| ||||| || ||||||||| |||| || || | ||| ||||  || |||||||||||||||||||||||||    
T  10499187 aaaacccacttgggttggcctggtggtattggcttgggatctgggagtctgctcttccttgaggtctcaggttcgattctctc 10499105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 4844576 - 4844507
Alignment:
Q  18 gttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctctc 86  Q
    |||||||| |||||||||||||| || || | |||||||| ||| | ||||||||||| |||||||||||    
T  4844576 gttggtctggtggtattgacttgggatctgggagtgtgctcctcctcgaggtctcaggatcgattctctc 4844507  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 4870272 - 4870203
Alignment:
Q  18 gttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctctc 86  Q
    |||||||| |||||||||||||| || || | |||||||| ||| | ||||||||||| |||||||||||    
T  4870272 gttggtctggtggtattgacttgggatctgggagtgtgctcctcctcgaggtctcaggatcgattctctc 4870203  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 82
Target Start/End: Original strand, 8051213 - 8051290
Alignment:
Q  6 aaacccacttgagttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattc 82  Q
    ||||||||||| ||||| || ||||||||| |||| ||||| | ||| |||||||| | ||||||||| |||||||||    
T  8051213 aaacccacttgggttggcctggtggtattggcttgggacctggcagtatgcttctcctcgaggtctcaagttcgattc 8051290  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 10445216 - 10445135
Alignment:
Q  7 aacccacttgagttggtctagtggta-ttgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctctc 86  Q
    |||||||||| ||||| ||||||| | ||| |||| ||||| | |||||||| ||| | |||||||||||||||||||||||    
T  10445216 aacccacttgggttggcctagtggcaattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctc 10445135  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 10683017 - 10682964
Alignment:
Q  9 cccacttgagttggtctagtggtattgacttgagacc-tagagtgtgcttctct 61  Q
    |||||||| |||| ||||||||||||| ||||||||| | ||||||||||||||    
T  10683017 cccacttgggttgatctagtggtattggcttgagaccttggagtgtgcttctct 10682964  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 21960571 - 21960632
Alignment:
Q  27 gtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctca 87  Q
    ||||||||| |||| ||||| |||||||||| ||| | |||||||||| |||||||||||||    
T  21960571 gtggtattggcttgggacctgagagtgtgctcctcctcgaggtctcagattcgattctctca 21960632  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 24481580 - 24481609
Alignment:
Q  6 aaacccacttgagttggtctagtggtattg 35  Q
    ||||||||||||||||||||||||||||||    
T  24481580 aaacccacttgagttggtctagtggtattg 24481609  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 53412948 - 53413025
Alignment:
Q  10 ccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 86  Q
    ||||||| |||||||||||||||||| ||||  ||||  ||||||||| ||| |  ||||||||||||| ||||||||    
T  53412948 ccacttgggttggtctagtggtattggcttgtaacctgggagtgtgctcctcctcaaggtctcaggttcaattctctc 53413025  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 12761523 - 12761587
Alignment:
Q  18 gttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgatt 81  Q
    |||||||| |||||||||||||| |||||  ||||||| | ||| ||||| ||||||||||||||    
T  12761523 gttggtctggtggtattgacttgggacctgggagtgtgttcctccttgagctctcaggttcgatt 12761587  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 16354968 - 16354888
Alignment:
Q  7 aacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 86  Q
    |||||||||| ||||| |||||||||||| ||||  ||||  ||||||||| ||| |   |||||||||||||||||||||    
T  16354968 aacccacttgggttggcctagtggtattggcttggaacctgtgagtgtgctcctcctcagggtctcaggttcgattctctc 16354888  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 28703480 - 28703400
Alignment:
Q  7 aacccacttgagttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctctc 86  Q
    |||||||||| ||||||| |||| ||||  |||| || || | |||||||| |||||  ||||||||||||||||||||||    
T  28703480 aacccacttgggttggtccagtgatattagcttgggatctgggagtgtgctcctcttcaaggtctcaggttcgattctctc 28703400  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 86
Target Start/End: Original strand, 29563920 - 29563980
Alignment:
Q  27 gtggtattgacttgagacctaga-gtgtgcttctctttgaggtctcaggttcgattctctc 86  Q
    ||||||||| ||||||| || || ||||||||||| | || ||||||||||||||||||||    
T  29563920 gtggtattggcttgagatctggaagtgtgcttctcctcgaagtctcaggttcgattctctc 29563980  T

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Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 34622599 - 34622567
Alignment:
Q  6 aaacccacttgagttggtctagtggtattgact 38  Q
    ||||||||||| |||||||||||||||||||||    
T  34622599 aaacccacttgggttggtctagtggtattgact 34622567  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 6 - 85
Target Start/End: Original strand, 35710390 - 35710470
Alignment:
Q  6 aaacccacttgagttggtctagtggtattgacttgagaccta-gagtgtgcttctctttgaggtctcaggttcgattctct 85  Q
    |||||||||||||||| ||| |||| ||||||||||||| || ||||||| | ||||||||||||||| ||||||||||||    
T  35710390 aaacccacttgagttgatctggtgggattgacttgagacttaggagtgtgttcctctttgaggtctcatgttcgattctct 35710470  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 3001376 - 3001459
Alignment:
Q  4 taaaacccacttgagttggtctagtggtattgacttgagaccta-gagtgtgcttctctttgaggtctcaggttcgattctctc 86  Q
    |||||| |||||| ||||| |||||||||||||||||||| ||| ||||||||| ||| ||||| |||||||||||||| ||||    
T  3001376 taaaactcacttgggttggcctagtggtattgacttgagatctaggagtgtgctcctccttgagatctcaggttcgattatctc 3001459  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 12994452 - 12994376
Alignment:
Q  7 aacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattc 82  Q
    ||||| |||||||||||||||||||||||||||| |||||  ||||||||| ||| || |||||||| |||||||||    
T  12994452 aacccgcttgagttggtctagtggtattgacttgggacctgggagtgtgctcctccttaaggtctcaagttcgattc 12994376  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 7 - 86
Target Start/End: Original strand, 19244109 - 19244189
Alignment:
Q  7 aacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 86  Q
    |||||||||| ||||||||| ||||||||||||| ||||| |||||||||| |||    ||||||||||||||||||||||    
T  19244109 aacccacttgggttggtctactggtattgacttgggacctgagagtgtgctcctccccaaggtctcaggttcgattctctc 19244189  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 4060291 - 4060210
Alignment:
Q  6 aaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 86  Q
    ||||||||||| ||||| ||||||||||||  |||| |||| |||||||||||||| |  || |||||||||||||||||||    
T  4060291 aaacccacttgggttggcctagtggtattggtttgaaacctgagagtgtgcttctcctcaagatctcaggttcgattctctc 4060210  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 6 - 98
Target Start/End: Original strand, 29503270 - 29503363
Alignment:
Q  6 aaacccacttgagttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctctcagtgtcaattta 98  Q
    ||||||||||| ||||| ||||||||||||  ||| ||||| | |||||||| ||| |  |||||||||||||||||||| | |||||||||||    
T  29503270 aaacccacttgggttggcctagtggtattggtttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctcccggtgtcaattta 29503363  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 40416466 - 40416386
Alignment:
Q  7 aacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 86  Q
    |||||||||| ||||| |||||||||||||||||  ||||  |||| |||| ||| || ||||||||||||||||||||||    
T  40416466 aacccacttgggttggcctagtggtattgacttggaacctgggagtatgctcctccttaaggtctcaggttcgattctctc 40416386  T

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Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 6 - 84
Target Start/End: Original strand, 37480074 - 37480153
Alignment:
Q  6 aaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctc 84  Q
    ||||||||||| ||||| || ||||||||| |||| ||||| |||||||||| ||| |  ||||||||||||||||||||    
T  37480074 aaacccacttgggttggcctggtggtattggcttgggacctgagagtgtgctcctcctcaaggtctcaggttcgattctc 37480153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 6 - 84
Target Start/End: Original strand, 39714991 - 39715070
Alignment:
Q  6 aaacccacttgagttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctc 84  Q
    ||||||||||| |||||  | |||||||||||||| ||||| | |||||||| ||| | |||||||||||||||||||||    
T  39714991 aaacccacttgggttggcatggtggtattgacttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctc 39715070  T

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Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 42327471 - 42327392
Alignment:
Q  7 aacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctct 85  Q
    |||||||||| ||||| |||||||||||| |||| |||||  ||||||||| ||| |  |||||||||||||||||||||    
T  42327471 aacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctct 42327392  T

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Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 33582014 - 33582067
Alignment:
Q  47 agagtgtgcttctctttgaggtctcaggttcgattctctc-agtgtcaatttag 99  Q
    |||||||||| ||| ||||||||||||||||||||||||| | |||||||||||    
T  33582014 agagtgtgctcctccttgaggtctcaggttcgattctctctaatgtcaatttag 33582067  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 5147755 - 5147719
Alignment:
Q  7 aacccacttgagttggtctagtggtattgacttgaga 43  Q
    |||||||||| ||||||||||||||||||||||||||    
T  5147755 aacccacttgggttggtctagtggtattgacttgaga 5147719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 42860348 - 42860424
Alignment:
Q  7 aacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattc 82  Q
    |||| ||||||||||| || ||| ||||||||||||||||  ||||||||| ||| | ||||||||| |||||||||    
T  42860348 aacctacttgagttggcctggtgatattgacttgagacctgggagtgtgctcctcctcgaggtctcaagttcgattc 42860424  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 21213780 - 21213847
Alignment:
Q  18 gttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctc 84  Q
    |||||||| ||||||||| |||| ||||| | |||||| | ||| |||||||||||||||||||||||    
T  21213780 gttggtctggtggtattggcttgggacctgggagtgtgttcctccttgaggtctcaggttcgattctc 21213847  T

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Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 28846691 - 28846766
Alignment:
Q  7 aacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgatt 81  Q
    |||||||||  |||| |||||||||||||||||| |||||  ||||||||| ||| | || |||||||||||||||    
T  28846691 aacccacttaggttgatctagtggtattgacttgggacctgggagtgtgctcctcctcgatgtctcaggttcgatt 28846766  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 19322767 - 19322848
Alignment:
Q  6 aaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 86  Q
    ||||||||||| |||| |||||||||||||  ||| |||||  ||||||||| |||||  ||||||| |||| |||||||||    
T  19322767 aaacccacttgggttgatctagtggtattggtttgggacctgggagtgtgctcctcttcaaggtctctggtttgattctctc 19322848  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 82
Target Start/End: Complemental strand, 34041665 - 34041588
Alignment:
Q  6 aaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattc 82  Q
    ||||||||||| ||||| ||||||||||||||||  || || |||||||||| ||| |  |||||||||||| |||||    
T  34041665 aaacccacttgggttggcctagtggtattgacttaggatctgagagtgtgctcctcctcaaggtctcaggtttgattc 34041588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 86
Target Start/End: Original strand, 13803495 - 13803575
Alignment:
Q  7 aacccacttgagttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctctc 86  Q
    |||||| ||| |||| ||||||| ||||| |||||||| ||| |||||||| ||| |  ||||||||||||||||| ||||    
T  13803495 aacccatttgggttgatctagtgatattggcttgagacttaggagtgtgctcctcctcaaggtctcaggttcgattatctc 13803575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 30808724 - 30808644
Alignment:
Q  6 aaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctct 85  Q
    ||||||||||| |||||||| ||| ||||| |||||||||| ||| | |||| ||| |  ||||||||| |||||||||||    
T  30808724 aaacccacttgggttggtctggtgatattggcttgagacctgagaatatgctcctcctcaaggtctcagtttcgattctct 30808644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 35916086 - 35916122
Alignment:
Q  7 aacccacttgagttggtctagtggtattgacttgaga 43  Q
    |||||||||| |||||||| |||||||||||||||||    
T  35916086 aacccacttgggttggtctggtggtattgacttgaga 35916122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 81
Target Start/End: Complemental strand, 38854539 - 38854463
Alignment:
Q  6 aaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgatt 81  Q
    ||||||| ||| |||||  ||||||| |||||||||||||| ||||||| | |||| |  |||||||||||||||||    
T  38854539 aaacccatttgtgttggcttagtggttttgacttgagacctgagagtgtacctctcctcaaggtctcaggttcgatt 38854463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 101
Target Start/End: Original strand, 39764989 - 39765029
Alignment:
Q  62 ttgaggtctcaggttcgattctctc-agtgtcaatttagct 101  Q
    ||||||||||||||||||||| ||| |||||||||||||||    
T  39764989 ttgaggtctcaggttcgattccctctagtgtcaatttagct 39765029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 9 - 99
Target Start/End: Original strand, 3624582 - 3624673
Alignment:
Q  9 cccacttgagttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctctcagtgtcaatttag 99  Q
    |||||||| ||||| |||||||||||| |||| ||||| | |||||||| |||||  |||||||||||||||||||||| | ||||||||||    
T  3624582 cccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcttcaaggtctcaggttcgattctctccgggtcaatttag 3624673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 7 - 86
Target Start/End: Original strand, 968362 - 968442
Alignment:
Q  7 aacccacttgagttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctctc 86  Q
    |||||||||||||||| || ||||||||| |||| ||||| | |||||||| ||| | |||||||||||||||||||||||    
T  968362 aacccacttgagttggcctggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctc 968442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 6 - 96
Target Start/End: Complemental strand, 19703564 - 19703472
Alignment:
Q  6 aaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc-agtgtcaatt 96  Q
    ||||||||||| ||||| |||||||||||| |||| ||||| |||||||||| ||| |  |||||||||||||||||||| | ||||||||||    
T  19703564 aaacccacttgggttggcctagtggtattggcttgggacctgagagtgtgctcctcctcaaggtctcaggttcgattctccctagtgtcaatt 19703472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 6 - 84
Target Start/End: Original strand, 16852339 - 16852418
Alignment:
Q  6 aaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctc 84  Q
    ||||||||||| ||||| |||||||||||| |||| |||||  ||||||||| ||| | |||||||||||||||||||||    
T  16852339 aaacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctc 16852418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 86
Target Start/End: Original strand, 18540298 - 18540378
Alignment:
Q  7 aacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 86  Q
    |||||||||| ||||| |||||||||||| |||| |||||  |||||| |||||| |  ||||||||||||||||||||||    
T  18540298 aacccacttgggttggcctagtggtattggcttgggacctgggagtgtacttctcctcaaggtctcaggttcgattctctc 18540378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 8484998 - 8485079
Alignment:
Q  6 aaacccacttgagttggtctagtggtattgacttgagaccta-gagtgtgcttctctttgaggtctcaggttcgattctctc 86  Q
    ||||||||||| ||||| || ||||||||  |||| |||||  ||||||||| |||||||||||||||  ||||||||||||    
T  8484998 aaacccacttgggttggcctggtggtatttgcttgggacctgtgagtgtgctcctctttgaggtctcattttcgattctctc 8485079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 17727504 - 17727447
Alignment:
Q  5 aaaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctct 61  Q
    |||||||||||| |||||||| ||||| |||||||||||||| |||||||||| ||||    
T  17727504 aaaacccacttgggttggtctcgtggtgttgacttgagacctcagagtgtgctcctct 17727447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 18546427 - 18546360
Alignment:
Q  18 gttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctc 84  Q
    ||||||||||||||||||| ||| ||||| ||||  |||| ||| | |||||||||||||||||||||    
T  18546427 gttggtctagtggtattgatttgggacctgagagcatgctcctcctcgaggtctcaggttcgattctc 18546360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 34966929 - 34966851
Alignment:
Q  4 taaaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgatt 81  Q
    ||||| ||||||||||||||||  |||||||| |||||||| |  ||||||||| ||||| ||||||||| ||| ||||    
T  34966929 taaaatccacttgagttggtctgatggtattggcttgagacttgggagtgtgctactcttcgaggtctcaagtttgatt 34966851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 35641978 - 35641897
Alignment:
Q  6 aaacccacttgagttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctctc 86  Q
    ||||||||||| |||||||| ||||||| | |||||||  | | |||||||| ||| | || ||||||||||||||||||||    
T  35641978 aaacccacttgggttggtctggtggtatcggcttgagatttgggagtgtgctcctcctcgatgtctcaggttcgattctctc 35641897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 5 - 86
Target Start/End: Original strand, 33549102 - 33549184
Alignment:
Q  5 aaaacccacttgagttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctctc 86  Q
    |||||||||||| |||||||| ||||||||| |||| ||||| | |||||||| ||| | |||||||||||||||||||||||    
T  33549102 aaaacccacttgggttggtctggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctc 33549184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 3715463 - 3715546
Alignment:
Q  18 gttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctct-cagtgtcaatttag 99  Q
    ||||| |||||||||||||||||||| || | ||| |||||||| | ||||||||| |||||||||||| ||||||||||||||    
T  3715463 gttgggctagtggtattgacttgagatctgggagtatgcttctcgtcgaggtctcaagttcgattctctccagtgtcaatttag 3715546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 346551 - 346608
Alignment:
Q  27 gtggtattgacttgagacctagagtgtgcttctctttgaggtctcaggttcgattctc 84  Q
    |||||||||||||| ||||| ||||||||||||| | ||||||||| |||||||||||    
T  346551 gtggtattgacttgggacctggagtgtgcttctcctcgaggtctcatgttcgattctc 346608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 6 - 99
Target Start/End: Complemental strand, 12234584 - 12234489
Alignment:
Q  6 aaacccacttgagttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctct-cagtgtcaatttag 99  Q
    ||||||||||  ||||| || |||||||||||||| ||||| | |||||||| |   | |||||||||||||||||||||| ||||||||||||||    
T  12234584 aaacccacttaggttggcctggtggtattgacttgggacctgggagtgtgctccctctcgaggtctcaggttcgattctctccagtgtcaatttag 12234489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 14557962 - 14558053
Alignment:
Q  7 aacccacttgagttggtctagtggtattgacttgagacctaga-gtgtgcttctctttgaggtctcaggttcgattctctcagtgtcaattt 97  Q
    |||||||||| |||||||| ||||| ||| |||| ||||| || ||||||| ||| |   ||||||||||||||||||| | ||||||||||    
T  14557962 aacccacttgggttggtctggtggtgttggcttgggacctggaagtgtgctcctcctccgggtctcaggttcgattctcccggtgtcaattt 14558053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 4105051 - 4105131
Alignment:
Q  10 ccacttgagttggtctagtgg---tattgacttgagaccta-gagtgtgcttctctttgaggtctcaggttcgattctctc 86  Q
    |||||||||||||||||||||   ||||| ||||| ||||| ||||||||| ||| || || |||||||||||||| ||||    
T  4105051 ccacttgagttggtctagtggtattattggcttgaaacctaggagtgtgctcctccttaagatctcaggttcgattttctc 4105131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 41
Target Start/End: Complemental strand, 22995187 - 22995153
Alignment:
Q  7 aacccacttgagttggtctagtggtattgacttga 41  Q
    ||||||||||||||||||| |||||||||||||||    
T  22995187 aacccacttgagttggtctggtggtattgacttga 22995153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 23793213 - 23793247
Alignment:
Q  7 aacccacttgagttggtctagtggtattgacttga 41  Q
    ||||||||||||||||||| |||||||||||||||    
T  23793213 aacccacttgagttggtctggtggtattgacttga 23793247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 32439805 - 32439879
Alignment:
Q  7 aacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgat 80  Q
    ||||||||||||||||| |  || ||||||||||  |||| | |||||||||||||| ||||||||| |||||||    
T  32439805 aacccacttgagttggtatgatgatattgacttggaacctgaaagtgtgcttctcttcgaggtctcaagttcgat 32439879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 12188380 - 12188299
Alignment:
Q  6 aaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 86  Q
    ||||||||||| ||||| |||||||||||| |||| |||||  ||||||||| ||| |  |||| ||| |||||||||||||    
T  12188380 aaacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtttcaagttcgattctctc 12188299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 86
Target Start/End: Original strand, 6385882 - 6385942
Alignment:
Q  27 gtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctctc 86  Q
    |||||||||||||| ||||| | | |||||| ||| || ||||||||||||||||||||||    
T  6385882 gtggtattgacttgggacctgggactgtgctcctccttaaggtctcaggttcgattctctc 6385942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 11423566 - 11423658
Alignment:
Q  7 aacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctct-cagtgtcaattt 97  Q
    ||||| |||| | |||||| |||||||||||||| ||  |  |||| |||||||| | |||||||||||||||||| ||| ||||||||||||    
T  11423566 aacccgcttgggctggtctggtggtattgacttgggatttgggagtatgcttctcctcgaggtctcaggttcgattttctccagtgtcaattt 11423658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 22995109 - 22995077
Alignment:
Q  9 cccacttgagttggtctagtggtattgacttga 41  Q
    ||||||||||||||||| |||||||||||||||    
T  22995109 cccacttgagttggtctggtggtattgacttga 22995077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 41
Target Start/End: Original strand, 23793291 - 23793323
Alignment:
Q  9 cccacttgagttggtctagtggtattgacttga 41  Q
    ||||||||||||||||| |||||||||||||||    
T  23793291 cccacttgagttggtctggtggtattgacttga 23793323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 34444809 - 34444881
Alignment:
Q  13 cttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctc 84  Q
    |||| ||||| || |||||||||||||| ||||| |||||||||| |||    ||||||||||||||||||||    
T  34444809 cttgggttggcctggtggtattgacttgggaccttagagtgtgctcctccccaaggtctcaggttcgattctc 34444881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 15399 - 15319
Alignment:
Q  7 aacccacttgagttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctctc 86  Q
    |||||||||| |||||||| ||||||||| |||| ||||| | |||||||| ||| | |||||||||||||||||||||||    
T  15399 aacccacttgggttggtctggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctc 15319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 9224779 - 9224855
Alignment:
Q  11 cacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 86  Q
    |||||| |||||||| |||||||||  |||||| || ||||| |||||||| |||||||||||||||||||||||||    
T  9224779 cacttgggttggtctggtggtattgctttgagatctgagagtatgcttctccttgaggtctcaggttcgattctctc 9224855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 14787408 - 14787332
Alignment:
Q  11 cacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 86  Q
    |||||||||||  ||||||||||||||||||||||| |||||||| ||||| |  |||| |||||||||||||||||    
T  14787408 cacttgagttgacctagtggtattgacttgagacctgagagtgtgtttctcctcaaggtgtcaggttcgattctctc 14787332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 51814491 - 51814574
Alignment:
Q  4 taaaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 86  Q
    ||||||||||||| ||||| ||  |||||||||||||||| || |||||||||| ||| |  ||||||||||||||||||||||    
T  51814491 taaaacccacttgggttggcctgatggtattgacttgagatctgagagtgtgctcctcctcaaggtctcaggttcgattctctc 51814574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 98
Target Start/End: Original strand, 2219972 - 2220065
Alignment:
Q  7 aacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctct-cagtgtcaattta 98  Q
    |||||||||| |||| ||| ||||||||| ||||  |||| | |||||||||||| | |||||||||||||||||||||| || ||||||||||    
T  2219972 aacccacttgggttgttctggtggtattggcttggaacctgaaagtgtgcttctcctcgaggtctcaggttcgattctctccaatgtcaattta 2220065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 25297770 - 25297850
Alignment:
Q  5 aaaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctc 84  Q
    |||||||||||| ||||||||||||||||||||||  || || |||||||||| ||| | ||||||| ||||| |||||||    
T  25297770 aaaacccacttgggttggtctagtggtattgacttaggatctgagagtgtgctcctcctcgaggtctgaggtttgattctc 25297850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 280 - 347
Target Start/End: Complemental strand, 16138210 - 16138143
Alignment:
Q  280 gcagcaagattacccggacgaacagataacgagataaaaaatgtatggcacacccatttgaagaaaag 347  Q
    ||||||| |||||| ||| ||||||| || || |||||||||||||||||||| || |||||||||||    
T  16138210 gcagcaaaattacctggaagaacagacaatgaaataaaaaatgtatggcacactcacttgaagaaaag 16138143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 17745328 - 17745238
Alignment:
Q  11 cacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc-agtgtcaatttag 99  Q
    |||||| ||||| |||||||||||| |||| ||||| || ||||||| ||| | ||||||||| |||||||||||||  ||||||||||||    
T  17745328 cacttgggttggcctagtggtattggcttgggacctgagcgtgtgctcctcctcgaggtctcatgttcgattctctctggtgtcaatttag 17745238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 99
Target Start/End: Original strand, 50901581 - 50901675
Alignment:
Q  7 aacccacttgagttggtctagtggta-ttgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctctcagtgtcaatttag 99  Q
    |||||||||| ||||| ||||||||| ||| |||| ||||| | |||||||| ||| | |||||||||  |||||||||||||||| ||||||||    
T  50901581 aacccacttgggttggcctagtggtaattggcttgggacctggtagtgtgctcctcctcgaggtctcaaattcgattctctcagtgccaatttag 50901675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 34460986 - 34460945
Alignment:
Q  6 aaacccacttgagttggtctagtggtattgacttgagaccta 47  Q
    |||||||||||||||||  |||||||||||||||||||||||    
T  34460986 aaacccacttgagttggcttagtggtattgacttgagaccta 34460945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 347
Target Start/End: Complemental strand, 16127120 - 16127053
Alignment:
Q  280 gcagcaagattacccggacgaacagataacgagataaaaaatgtatggcacacccatttgaagaaaag 347  Q
    ||||||| |||||| ||| ||||||| || || ||||||||| | |||||||| ||||||||||||||    
T  16127120 gcagcaaaattacctggaagaacagacaatgaaataaaaaatatgtggcacactcatttgaagaaaag 16127053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 344
Target Start/End: Complemental strand, 33731230 - 33731163
Alignment:
Q  277 attgcagcaagattacccggacgaacagataacgagataaaaaatgtatggcacacccatttgaagaa 344  Q
    |||||||||| | |||| ||| |||| ||||| || ||||||||||| |||||||| |||||||||||    
T  33731230 attgcagcaaaactaccaggaagaacggataatgaaataaaaaatgtgtggcacacgcatttgaagaa 33731163  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 38979018 - 38978967
Alignment:
Q  7 aacccacttgagttggtctagtggtattgacttgagaccta-gagtgtgctt 57  Q
    |||||| ||| ||||| |||||||||||||||||||||||| ||||||||||    
T  38979018 aacccatttgggttggcctagtggtattgacttgagacctaggagtgtgctt 38978967  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 19528403 - 19528325
Alignment:
Q  7 aacccacttgagttggtctagtggtattgacttgagaccta-gagtgtgcttctctttgaggtctcaggttcgattctc 84  Q
    |||||||||| ||||| || ||||||||| |||| || ||| ||||||||| ||| |  ||||||||||||||||||||    
T  19528403 aacccacttgggttggcctggtggtattggcttgggatctatgagtgtgctcctcctcaaggtctcaggttcgattctc 19528325  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 29817672 - 29817746
Alignment:
Q  4 taaaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttc 77  Q
    |||||| |||||| ||||| || ||| |||||||||||||||| |||||||||| |||||  || ||||||||||    
T  29817672 taaaactcacttgggttggcctggtgatattgacttgagacctgagagtgtgctcctcttcaagttctcaggttc 29817746  T

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Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 6 - 83
Target Start/End: Original strand, 40257398 - 40257476
Alignment:
Q  6 aaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattct 83  Q
    ||||||||||| ||||| || ||||||||| ||||||||||  ||||||||| ||| | ||||||||| |||| |||||    
T  40257398 aaacccacttgggttggcctggtggtattggcttgagacctgggagtgtgctcctcctcgaggtctcaagttcaattct 40257476  T

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Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 50919972 - 50920034
Alignment:
Q  25 tagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 86  Q
    ||||||||||||||||| |||| ||||||||||  || || |||| |||||||||||||||||    
T  50919972 tagtggtattgacttgaaacctgagagtgtgctcatccttaaggtttcaggttcgattctctc 50920034  T

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Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 52029993 - 52029935
Alignment:
Q  27 gtggtattgacttgagaccta-gagtgtgcttctctttgaggtctcaggttcgattctc 84  Q
    ||||||||||||||||||||| ||||||||| ||  |  ||||||||||||||||||||    
T  52029993 gtggtattgacttgagacctaggagtgtgctccttctcaaggtctcaggttcgattctc 52029935  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 8177259 - 8177178
Alignment:
Q  6 aaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 86  Q
    ||||||| ||||||||| |||||||||||| |||| || ||  ||||||||| ||| |  |||| |||||||||||||||||    
T  8177259 aaacccatttgagttggcctagtggtattggcttgggatctgggagtgtgctcctcctcaaggtttcaggttcgattctctc 8177178  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 98
Target Start/End: Complemental strand, 11068919 - 11068826
Alignment:
Q  7 aacccacttgagttggtctagtggtattgacttgaga-cctagagtgtgcttctctttgaggtctcaggttcgattctct-cagtgtcaattta 98  Q
    |||||| ||| |||| ||| |||||||||||||| || ||  ||||||||| |||||||||  ||||| ||| ||||||| |||||||||||||    
T  11068919 aacccatttgggttgatctggtggtattgacttgggatccaggagtgtgctcctctttgagacctcagattcaattctctccagtgtcaattta 11068826  T

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Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 36371469 - 36371550
Alignment:
Q  6 aaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 86  Q
    ||||||||||| ||||| |||||||||||| ||||  ||||  ||||||||| ||| |  |||||| |||||||||||||||    
T  36371469 aaacccacttgggttggcctagtggtattggcttggaacctgggagtgtgctcctcctcaaggtctgaggttcgattctctc 36371550  T

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Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 9165271 - 9165191
Alignment:
Q  7 aacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 86  Q
    |||||||||| ||||| |||||||||||| |||| |||||  ||||||||| ||| |  | ||||||||||| ||||||||    
T  9165271 aacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaagtctcaggttcaattctctc 9165191  T

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Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 15786393 - 15786317
Alignment:
Q  10 ccacttgagttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctct 85  Q
    ||||||| ||||||||||| |||||| |||| || || | |||||||| ||| |  |||||||||||||||||||||    
T  15786393 ccacttgggttggtctagtagtattggcttgggatctgggagtgtgctcctcctcaaggtctcaggttcgattctct 15786317  T

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Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 86
Target Start/End: Original strand, 28411350 - 28411410
Alignment:
Q  27 gtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 86  Q
    |||||||||||||| ||  | |||||||||| |||||||||||||||| ||| ||||||||    
T  28411350 gtggtattgacttgggatatgagagtgtgctcctctttgaggtctcagattcaattctctc 28411410  T

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Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 44961765 - 44961857
Alignment:
Q  7 aacccacttgagttggtctagtggtattgacttgagaccta-gagtgtgcttctctttgaggtctcaggttcgattctctc-agtgtcaattt 97  Q
    |||||||||| |||||||  ||||||||  |||||||  || ||||||||| ||| |   ||||||||||||||||||||| |||||||||||    
T  44961765 aacccacttgggttggtcaggtggtattagcttgagatttaagagtgtgctcctcctcagggtctcaggttcgattctctctagtgtcaattt 44961857  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 99
Target Start/End: Original strand, 47044717 - 47044810
Alignment:
Q  7 aacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctcagtgtcaatttag 99  Q
    ||||||||||  |||| || |||||||||||||| || || ||||| |||| ||| | ||||||||||||||||||||| ||| ||||||||||    
T  47044717 aacccacttggattggcctggtggtattgacttgggatctgagagtttgctcctcctcgaggtctcaggttcgattctcccagcgtcaatttag 47044810  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 37109427 - 37109347
Alignment:
Q  7 aacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 86  Q
    |||||||||| ||||| |||||||||||| |||| |||||  ||||||||| ||| |  ||||||||||||||||||||||    
T  37109427 aacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctctc 37109347  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 6 - 99
Target Start/End: Complemental strand, 21660221 - 21660126
Alignment:
Q  6 aaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc-agtgtcaatttag 99  Q
    ||||| ||||| |||||||| ||||||||||||||||| ||  |||||||||  || | ||||||||| |||||||| |||| |||||||||||||    
T  21660221 aaaccaacttgggttggtctggtggtattgacttgagatctgggagtgtgctcttcctcgaggtctcaagttcgattatctctagtgtcaatttag 21660126  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 6 - 99
Target Start/End: Complemental strand, 21668985 - 21668890
Alignment:
Q  6 aaacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc-agtgtcaatttag 99  Q
    ||||| ||||| |||||||| ||||||||||||||||| ||  |||||||||  || | ||||||||| |||||||| |||| |||||||||||||    
T  21668985 aaaccaacttgggttggtctggtggtattgacttgagatctgggagtgtgctcttcctcgaggtctcaagttcgattatctctagtgtcaatttag 21668890  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 99
Target Start/End: Original strand, 46545711 - 46545805
Alignment:
Q  7 aacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctcag-tgtcaatttag 99  Q
    |||||||||| ||||| |||||||||||| |||||||||| |||||||||| ||| |  || |||||| ||||||| |||| | |||||||||||    
T  46545711 aacccacttgggttggcctagtggtattggcttgagacctgagagtgtgctcctcctcaagatctcagattcgattttctctgatgtcaatttag 46545805  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 13901746 - 13901819
Alignment:
Q  11 cacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattct 83  Q
    |||||| |||||||||||||||||| ||||||||||  ||||||| | ||| ||||||||||| |||| |||||    
T  13901746 cacttgggttggtctagtggtattggcttgagacctgggagtgtgttcctccttgaggtctcaagttcaattct 13901819  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 19112929 - 19112986
Alignment:
Q  28 tggtattgacttgagaccta-gagtgtgcttctctttgaggtctcaggttcgattctc 84  Q
    |||||||||||||||||||| ||||||||| ||||| ||| | |||||||||||||||    
T  19112929 tggtattgacttgagacctaggagtgtgctcctcttcgagttatcaggttcgattctc 19112986  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 52254477 - 52254400
Alignment:
Q  10 ccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 86  Q
    ||||||||||||||||  ||||||||||||| ||  | |||||||||| ||| ||||||| ||||||| |||||||||    
T  52254477 ccacttgagttggtctgatggtattgacttgggatatgagagtgtgctcctccttgaggtttcaggttagattctctc 52254400  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 3780736 - 3780657
Alignment:
Q  7 aacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctct 85  Q
    |||||||| || ||||||| |||||||||||||||||||| | ||| | |||||  ||||||||| |||||| |||||||    
T  3780736 aacccactagaattggtctggtggtattgacttgagacctgaaagtattcttcttcttgaggtcttaggttcaattctct 3780657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 99
Target Start/End: Complemental strand, 7949531 - 7949436
Alignment:
Q  6 aaacccacttgagttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctctc-agtgtcaatttag 99  Q
    ||||||||||| | ||| |||| ||||||| |||| ||||| | |||||||| ||| |  ||||||||||||||||||||||  ||||||||||||    
T  7949531 aaacccacttgggctggcctagcggtattggcttgggacctcggagtgtgctcctcctcaaggtctcaggttcgattctctctggtgtcaatttag 7949436  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 43623516 - 43623441
Alignment:
Q  11 cacttgagttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctct 85  Q
    |||||| ||| |||||||| ||||||||||||| |  | |||||||| ||| |||| |||||||||||||||||||    
T  43623516 cacttgggttagtctagtgatattgacttgagatcagggagtgtgctcctccttgaagtctcaggttcgattctct 43623441  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 306379 - 306306
Alignment:
Q  14 ttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 86  Q
    ||||||||||||||||||||||| ||| || || |||||||| | |||||| | ||||||| ||||||| ||||    
T  306379 ttgagttggtctagtggtattgatttgggatctgagagtgtgatcctctttaaagtctcagattcgattttctc 306306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 7292871 - 7292794
Alignment:
Q  10 ccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 86  Q
    ||||||| |||||||||||||||||| ||||  ||||  ||||||||| ||| |  | ||||||||||||||||||||    
T  7292871 ccacttgggttggtctagtggtattggcttggaacctgggagtgtgctcctcctcaaagtctcaggttcgattctctc 7292794  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 19229283 - 19229206
Alignment:
Q  7 aacccacttgagttggtctagtggtattgacttgagacctagagtgtgcttctctttgaggtctcaggttcgattctc 84  Q
    |||||| ||| ||||| || ||||||||| | || ||| |||| |||||| ||| | |||||||||||||||||||||    
T  19229283 aacccatttgggttggcctggtggtattggcctgggacttagaatgtgctcctcctcgaggtctcaggttcgattctc 19229206  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 47386826 - 47386773
Alignment:
Q  47 agagtgtgcttctctttgaggtctcaggttcgattctctc-agtgtcaatttag 99  Q
    |||||| ||||||  |||||||||||||||| |||||||| |||||||||||||    
T  47386826 agagtgcgcttcttcttgaggtctcaggttcaattctctctagtgtcaatttag 47386773  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 98
Target Start/End: Original strand, 51948480 - 51948573
Alignment:
Q  7 aacccacttgagttggtctagtggtattgacttgagacctag-agtgtgcttctctttgaggtctcaggttcgattctct-cagtgtcaattta 98  Q
    |||||||||| ||||  || || ||||||||||| || |||| |||||||  ||| | |||||||||||||| ||||||| |||||||||||||    
T  51948480 aacccacttgggttgtcctggtagtattgacttgggatctaggagtgtgcccctcctcgaggtctcaggttcaattctctccagtgtcaattta 51948573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 1730565 - 1730485
Alignment:
Q  7 aacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 86  Q
    |||||||||| ||||  |||||||||||| |||| ||||| |||||||||| |||||  | ||||||| ||| ||||||||    
T  1730565 aacccacttgggttgacctagtggtattggcttgggacctgagagtgtgctcctcttcaaagtctcagattctattctctc 1730485  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 8306485 - 8306577
Alignment:
Q  7 aacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc-agtgtcaattt 97  Q
    |||||||||||||||||||  ||| || | ||||||||||  ||||||||| ||| | || |||| | ||||||||||||| |||||||||||    
T  8306485 aacccacttgagttggtctgttggcatcggcttgagacctgggagtgtgctcctcctcgaagtcttaagttcgattctctctagtgtcaattt 8306577  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 30557335 - 30557267
Alignment:
Q  18 gttggtctagtggtattgacttgagaccta-gagtgtgcttctctttgaggtctcaggttcgattctct 85  Q
    |||||||| |||||||||||||| ||| || ||||||||| || || |||| |||| ||||||||||||    
T  30557335 gttggtctggtggtattgacttgggacgtaggagtgtgctccttttcgagggctcatgttcgattctct 30557267  T

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Target: scaffold0118 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 41709 - 41629
Alignment:
Q  7 aacccacttgagttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctctc 86  Q
    |||||||||| ||||| |||||||||||| ||||||| || ||||| |||| ||| | |||||||||||||| ||||||||    
T  41709 aacccacttgggttggcctagtggtattggcttgagatctgagagtatgctcctcctcgaggtctcaggttcaattctctc 41629  T

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Target: scaffold0211 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 86
Target Start/End: Original strand, 24053 - 24133
Alignment:
Q  7 aacccacttgagttggtctagtggtattgacttgagaccta-gagtgtgcttctctttgaggtctcaggttcgattctctc 86  Q
    |||||||||| ||||| ||| ||||||||||||| ||| || ||||||||| ||||| || || |||||||||||| ||||    
T  24053 aacccacttgggttggcctaatggtattgacttgggacttaggagtgtgctcctcttcgaagtgtcaggttcgattatctc 24133  T

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Target: scaffold0006 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 163074 - 162991
Alignment:
Q  18 gttggtctagtggtattgacttgagacct-agagtgtgcttctctttgaggtctcaggttcgattctct-cagtgtcaatttag 99  Q
    |||||||||||||| |||||||  ||||| |||||||||| |||  | |||||| |||||||||||||| | ||||||||||||    
T  163074 gttggtctagtggttttgacttatgacctgagagtgtgctcctccataaggtctgaggttcgattctctccggtgtcaatttag 162991  T

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Target: scaffold0008 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 98
Target Start/End: Original strand, 49347 - 49399
Alignment:
Q  47 agagtgtgcttctctttgaggtctcaggttcgattctct-cagtgtcaattta 98  Q
    |||||||||| ||||| ||||| |||||||||||||||| | |||||||||||    
T  49347 agagtgtgctcctcttcgaggtatcaggttcgattctctccggtgtcaattta 49399  T

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