View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21235_low_15 (Length: 437)
Name: NF21235_low_15
Description: NF21235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21235_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 9269751 - 9269548
Alignment:
| Q |
18 |
tgaagcataagagacattgtaaataaactaatctaactacatacaatattccatattccagatttacaaacatattgataactatatctcatgaatctct |
117 |
Q |
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| T |
9269751 |
tgaaggatgagagacattgtaaataaactaatctaactacatacaatattccatattccagatttacaaacatattgataactatatctcatgaatctct |
9269652 |
T |
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| Q |
118 |
tattttgtttcttcaattgcctgtgtttatcgatcaattgagttgtgtcggatagaattggggcttatgaaataataacattatcggtgagttgatttgt |
217 |
Q |
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|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||| |
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| T |
9269651 |
tattttgtttctccgattgcctgtgtttatcgatcaattgagttgtgtcggatagaattggagcttatgaaataataacatattcggtgacttgatttgt |
9269552 |
T |
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| Q |
218 |
taaa |
221 |
Q |
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|||| |
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| T |
9269551 |
taaa |
9269548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 233 - 420
Target Start/End: Complemental strand, 9269516 - 9269329
Alignment:
| Q |
233 |
aaatcctccttgattcactacctttttccaatggaaaaatctaatttaaaacaattgatgtaatcatggagactgtagaatcgaagaattagggtgaatt |
332 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
9269516 |
aaatcctccttgattcactaccttcttccaatggaaaaatctaatttaaaacaattgatgtaatcaaggagagcatagaatcgaagaattagggtgaatt |
9269417 |
T |
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| Q |
333 |
aagaagtaatttttgcgtatcagattgaacagggaaagaagatgaaatgatgtgtctctctctttgtttgatttcttgtgtggagtat |
420 |
Q |
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| T |
9269416 |
tagaagtaagttgtgcgtatcagattgaacagggaaagaagatgaaatcatgtgtttctctctttgtttgatttcttgtgtggagtat |
9269329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 170; Significance: 4e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 28 - 221
Target Start/End: Original strand, 10854280 - 10854473
Alignment:
| Q |
28 |
gagacattgtaaataaactaatctaactacatacaatattccatattccagatttacaaacatattgataactatatctcatgaatctcttattttgttt |
127 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10854280 |
gagacattgcaaataaactaatctaactacatacaatattccatattccatattcacaaacatattgataactatatctcatgaatctcttattttgttt |
10854379 |
T |
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| Q |
128 |
cttcaattgcctgtgtttatcgatcaattgagttgtgtcggatagaattggggcttatgaaataataacattatcggtgagttgatttgttaaa |
221 |
Q |
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| T |
10854380 |
ctccgattgcctgtgtttatcgatcaattgagttgtgtcggatagaattggggcttatgaaataataacattatcggtgacttgatttgttaaa |
10854473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 232 - 420
Target Start/End: Original strand, 10854504 - 10854692
Alignment:
| Q |
232 |
aaaatcctccttgattcactacctttttccaatggaaaaatctaatttaaaacaattgatgtaatcatggagactgtagaatcgaagaattagggtgaat |
331 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||| |||||||||||||||| |
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| T |
10854504 |
aaaatcctccttgattcactaccttcttccaatggaaaaatctaatttaaa-caattgatgtaatcaaggagagggtagaatcaaagaattagggtgaat |
10854602 |
T |
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| Q |
332 |
taagaagtaatttttgc-gtatcagattgaacagggaaagaagatgaaatgatgtgtctctctctttgtttgatttcttgtgtggagtat |
420 |
Q |
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| T |
10854603 |
ttagaagtaagttgtgcagtatcagattgaacaaggaaagaagatgaaatcatgtgtctctctctttgtttgatttcttgtgtggagtat |
10854692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 23733639 - 23733683
Alignment:
| Q |
67 |
tccatattccagatttacaaacatattgataactatatctcatga |
111 |
Q |
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| T |
23733639 |
tccatattccaaatttacaaacttattgataactatatcacatga |
23733683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 23740831 - 23740875
Alignment:
| Q |
67 |
tccatattccagatttacaaacatattgataactatatctcatga |
111 |
Q |
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| T |
23740831 |
tccatattccaaatttacaaacttattgataactatatcacatga |
23740875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 110
Target Start/End: Original strand, 23616982 - 23617025
Alignment:
| Q |
67 |
tccatattccagatttacaaacatattgataactatatctcatg |
110 |
Q |
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||||||||||| |||||||||| |||||||||||||||| |||| |
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| T |
23616982 |
tccatattccaaatttacaaacttattgataactatatcacatg |
23617025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 110
Target Start/End: Original strand, 23648323 - 23648366
Alignment:
| Q |
67 |
tccatattccagatttacaaacatattgataactatatctcatg |
110 |
Q |
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||||||||||| |||||||||| |||||||||||||||| |||| |
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| T |
23648323 |
tccatattccaaatttacaaacttattgataactatatcacatg |
23648366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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