View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21235_low_17 (Length: 381)

Name: NF21235_low_17
Description: NF21235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21235_low_17
NF21235_low_17
[»] chr6 (22 HSPs)
chr6 (1-371)||(33303785-33304155)
chr6 (1-332)||(33387465-33387792)
chr6 (133-335)||(33644925-33645127)
chr6 (42-335)||(9166095-9166384)
chr6 (19-208)||(33261922-33262113)
chr6 (1-308)||(33409275-33409580)
chr6 (133-318)||(33285030-33285215)
chr6 (15-206)||(33358226-33358424)
chr6 (1-211)||(33398363-33398571)
chr6 (76-211)||(28870672-28870806)
chr6 (88-205)||(33407756-33407873)
chr6 (88-208)||(33396806-33396926)
chr6 (91-328)||(33271219-33271456)
chr6 (275-335)||(33358496-33358556)
chr6 (32-115)||(31563400-31563483)
chr6 (76-207)||(33281096-33281227)
chr6 (266-319)||(33057135-33057188)
chr6 (69-211)||(33056935-33057074)
chr6 (228-309)||(31563226-31563307)
chr6 (261-328)||(33398651-33398718)
chr6 (261-335)||(28870548-28870622)
chr6 (261-305)||(33262175-33262219)
[»] chr2 (2 HSPs)
chr2 (71-335)||(17441268-17441538)
chr2 (88-181)||(17446955-17447048)
[»] scaffold0428 (3 HSPs)
scaffold0428 (15-208)||(5691-5886)
scaffold0428 (76-207)||(13025-13156)
scaffold0428 (261-309)||(5945-5993)
[»] scaffold1408 (2 HSPs)
scaffold1408 (70-208)||(2-140)
scaffold1408 (261-309)||(199-247)
[»] chr4 (2 HSPs)
chr4 (75-161)||(31499608-31499694)
chr4 (146-211)||(31485290-31485355)


Alignment Details
Target: chr6 (Bit Score: 359; Significance: 0; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 33303785 - 33304155
Alignment:
Q  1 tgatctatctgttgtttcttctctgtgaagtttatgactcttgagatgaatgattcttgttcttgttccggttctggttgtgtctcatcttcaattgcca 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33303785 tgatccatctgttgtttcttctctgtgaagtttatgactcttgagatgaatgattcttgttcttgttccggttctggttgtgtctcatcttcaattgcca 33303884  T
Q  101 aattcttgcacttcccagcaaagaaattttcttgattcatcattgttaagttgaattcttgcaggtcttctttacatacccgccgatacccgcaactctt 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  33303885 aattcttgcacttcccagccaagaaattttcttgattcatcattgttaagttgaattcttgcaggtcttctttacatacccaccgatacccgcaactctt 33303984  T
Q  201 cacctccaaactaaaatcttcaccctcaaaaatattaaaatggattttttcaaattcactataggactctcgggggaagtagattatccataggtgactt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33303985 cacctccaaactaaaatcttcaccctcaaaaatattaaaatggattttttcaaattcactataggactctcgggggaagtagattatccataggtgactt 33304084  T
Q  301 gatttggtcataacaagacctccattgagaattacggtagcactcctacagctcatcctaatcaatttctt 371  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33304085 gatttggtcataacaagacctccattgagaattacggtagcactcctacagctcatcctaatcaatttctt 33304155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 33387465 - 33387792
Alignment:
Q  1 tgatctatctgttgtttcttctctgtgaagt--ttatgactcttgagatgaatgattcttgttcttgttccggttctggttgtgtctcatcttcaattgc 98  Q
    ||||| ||||||||||||||||| ||| | |  ||||||||  ||| |||||||||||||||| |      |||| | |||||||| |||||||||||||    
T  33387465 tgatccatctgttgtttcttctcggtgtactagttatgacttgtgacatgaatgattcttgttgt------ggttgtagttgtgtcccatcttcaattgc 33387558  T
Q  99 caaattcttgcacttcccagcaaagaaattttcttgattcatcattgttaagttgaattcttgcaggtcttctttacatacccgccgatacccgcaactc 198  Q
    |||| |||| ||||||  ||| ||| ||||||| ||||| ||||||| ||||||||||||||| ||||||| |||||||||||  |||||||||||||||    
T  33387559 caaaatcttacacttcggagccaaggaattttcgtgatttatcattggtaagttgaattcttgtaggtcttgtttacatacccaacgatacccgcaactc 33387658  T
Q  199 ttcacctccaaactaaaatcttcaccctcaaaaatattaaaatggattttttcaaattcactataggactctcgggggaagtagattatccataggtgac 298  Q
    |||||||||| ||  ||| |||  |||| |||||| | ||||  ||| ||| ||||||||    |||||||||| |||||||||||||||||||||||||    
T  33387659 ttcacctccatacccaaagcttgccccttaaaaatgtcaaaacagatatttccaaattcatccgaggactctcgtgggaagtagattatccataggtgac 33387758  T
Q  299 ttgatttggtcataacaagacctccattgagaat 332  Q
    ||||||||||| ||||||||||||||||||||||    
T  33387759 ttgatttggtcgtaacaagacctccattgagaat 33387792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 133 - 335
Target Start/End: Complemental strand, 33645127 - 33644925
Alignment:
Q  133 tgattcatcattgttaagttgaattcttgcaggtcttctttacatacccgccgatacccgcaactcttcacctccaaactaaaatcttcaccctcaaaaa 232  Q
    ||||||||||||||||||||||| | ||| ||||||| |||||||||||  |||||||| ||||||||||||| || ||  | | |||| | ||||||||    
T  33645127 tgattcatcattgttaagttgaactattgtaggtcttgtttacatacccaacgatacccacaactcttcaccttcatacccagaccttccctctcaaaaa 33645028  T
Q  233 tattaaaatggattttttcaaattcactataggactctcgggggaagtagattatccataggtgacttgatttggtcataacaagacctccattgagaat 332  Q
    | | ||||| |||| || |||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||| ||| |||||| |||| ||||||    
T  33645027 tgtcaaaatagattcttccaaattcattataggaatctcgagggaagtagattatccataggtgacttgatttggtcgtaataagaccaccatcgagaat 33644928  T
Q  333 tac 335  Q
    |||    
T  33644927 tac 33644925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 42 - 335
Target Start/End: Original strand, 9166095 - 9166384
Alignment:
Q  42 tgagatgaatgattcttgttcttgttccggttctggttgtgtctcatcttcaattgccaaattcttgcacttcccagcaaagaaattttcttgattcatc 141  Q
    ||||| |||||||||||||||| |||| |||| ||| ||| ||||||| | |||||||||| |||||||| ||| ||| ||  | ||||| |||||||||    
T  9166095 tgagacgaatgattcttgttctggttc-ggttgtggctgtctctcatcctaaattgccaaagtcttgcacgtccgagccaatgatttttcgtgattcatc 9166193  T
Q  142 attgttaagttgaattcttgcaggtcttctttacatacccgccgatacccgcaactcttcacctccaaactaaaatcttcaccctcaaaaatattaaaat 241  Q
       ||||||||||| ||||| ||||||| |||||||||||  || || || ||| ||||||||| || |   ||| ||||||||  || ||| | |||||    
T  9166194 ---gttaagttgaactcttgtaggtcttgtttacatacccaacggtatccacaagtcttcaccttcatatccaaaccttcaccccgaataatgtcaaaat 9166290  T
Q  242 ggattttttcaaattcactataggactctcgggggaagtagattatccataggtgacttgatttggtcataacaagacctccattgagaattac 335  Q
    |||||||| ||||||||   |||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||  |||||| ||||||||    
T  9166291 ggatttttccaaattcatcgtaggactctcgggggaggtagattatccataggtgactggatttggtcaaaacaagaaatccattcagaattac 9166384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 33261922 - 33262113
Alignment:
Q  19 ttctctgtgaagt--ttatgactcttgagatgaatgattcttgttcttgttccggttctggttgtgtctcatcttcaattgccaaattcttgcacttccc 116  Q
    |||||||||||||  ||||||||  |||| |||||||||||||||||  ||  |||| |||||||||||||||||||||||||||| |||| || |||      
T  33261922 ttctctgtgaagtagttatgacttgtgaggtgaatgattcttgttctgattgtggttgtggttgtgtctcatcttcaattgccaaaatcttacatttcga 33262021  T
Q  117 agcaaagaaattttcttgattcatcattgttaagttgaattcttgcaggtcttctttacatacccgccgatacccgcaactcttcacctcca 208  Q
    ||| ||| | ||||| ||||||||||||||||||||||| ||||| ||||||| |||||||||||   ||||||||||||||||||||||||    
T  33262022 agccaaggatttttcatgattcatcattgttaagttgaactcttgtaggtcttgtttacatacccaatgatacccgcaactcttcacctcca 33262113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 33409275 - 33409580
Alignment:
Q  1 tgatctatctgttgtttcttctctgt--gaagt--ttatgactcttgagatgaatgattcttgttcttgttccggttctggttgtgtctcatcttcaatt 96  Q
    ||||| |||||||||||||||| | |  |||||  ||||||||  ||||||||||||||||||||||      |||| ||||||||||||  ||||||||    
T  33409275 tgatccatctgttgtttcttctttcttcgaagtagttatgacttgtgagatgaatgattcttgttct------ggttgtggttgtgtctcgccttcaatt 33409368  T
Q  97 gccaaattcttgcacttcccagcaaagaaattttcttgattcatcattgttaagttgaattcttgcaggtcttctttacatacccgccgatacccgcaac 196  Q
    |||| | |||| ||||||  ||| ||| ||||||| |||||||||||||| |||||||| | ||| ||||||| |||||||||||  |||||||||||||    
T  33409369 gccataatcttacacttctgagccaaggaattttcatgattcatcattgtgaagttgaacttttgtaggtcttgtttacatacccaacgatacccgcaac 33409468  T
Q  197 tcttcacctccaaactaaaatcttcaccctcaaaaatattaaaatggattttttcaaattcactataggactctcgggggaagtagattatccataggtg 296  Q
    | |||||||| ||||  | | ||||||||| | ||   ||   | |||   || || |  ||  ||||||||||||||||||||||| || |||||||||    
T  33409469 ttttcacctcaaaacccacaacttcaccctgataacatttcgcacggagagttccataaacatcataggactctcgggggaagtagactagccataggtg 33409568  T
Q  297 acttgatttggt 308  Q
    ||||||||||||    
T  33409569 acttgatttggt 33409580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 133 - 318
Target Start/End: Original strand, 33285030 - 33285215
Alignment:
Q  133 tgattcatcattgttaagttgaattcttgcaggtcttctttacatacccgccgatacccgcaactcttcacctccaaactaaaatcttcaccctcaaaaa 232  Q
    ||||||||||||||||| ||||| ||||| ||||||| |||||||||||  ||||| || ||||| |||||||||| ||  |||||||||||| ||| ||    
T  33285030 tgattcatcattgttaaattgaactcttgtaggtcttgtttacatacccaacgatatccacaactgttcacctccatacccaaatcttcacccccaacaa 33285129  T
Q  233 tattaaaatggattttttcaaattcactataggactctcgggggaagtagattatccataggtgacttgatttggtcataacaaga 318  Q
    | | | ||  |||||||||||||| |  |||||||||||  | || ||||||||||||||| ||||||||||||||| ||| ||||    
T  33285130 tgtaacaactgattttttcaaatttatcataggactctctagagaggtagattatccatagatgacttgatttggtcgtaataaga 33285215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 33358226 - 33358424
Alignment:
Q  15 tttcttctctgtgaagt--ttatgactcttgagatgaatgattcttgttcttgttccggttctggttgtg------tctcatcttcaattgccaaattct 106  Q
    |||||||||||||||||  ||||||||  |||||||||||||||||||||| ||| |||||  ||||| |      ||| |||||||||||||||| |||    
T  33358226 tttcttctctgtgaagtaattatgacttgtgagatgaatgattcttgttctagttgcggttgcggttgcggttgcgtctaatcttcaattgccaaaatct 33358325  T
Q  107 tgcacttcccagcaaagaaattttcttgattcatcattgttaagttgaattcttgcaggtcttctttacatacccgccgatacccgcaactcttcacctc 206  Q
    |||| |||||||  |||| |||||| |||||||||||||| |||||||| ||||| ||||||| |||| | ||||  |||||| | ||||||||||||||    
T  33358326 tgcatttcccagttaagagattttcgtgattcatcattgtgaagttgaactcttgtaggtcttgttta-aaacccaacgatactcacaactcttcacctc 33358424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 33398363 - 33398571
Alignment:
Q  1 tgatctatctgttgtttcttc--tctgtgaagt--ttatgactcttgagatgaatgattcttgttcttgttccggttctggttgtgtctcatcttcaatt 96  Q
    ||||| |||||||||||||||  |||  |||||  ||||||||  ||||||||||||||||||||||      |||| ||||||||||||  ||||||||    
T  33398363 tgatccatctgttgtttcttccttcttcgaagtagttatgacttgtgagatgaatgattcttgttct------ggttgtggttgtgtctcgccttcaatt 33398456  T
Q  97 gccaaattcttgcacttcccagcaaagaaattttcttgattcatcattgttaagttgaattcttgcaggtcttctttacatacccgccgatacccgcaac 196  Q
    |||| | |||| |||||   ||||||| ||||||| |||||||||||||| ||||| || | | | ||||||| |||||||||||  |||||||||||||    
T  33398457 gccataatcttacacttttgagcaaaggaattttcatgattcatcattgtgaagttcaactttcgtaggtcttgtttacatacccaacgatacccgcaac 33398556  T
Q  197 tcttcacctccaaac 211  Q
    |||||||||| ||||    
T  33398557 tcttcacctcaaaac 33398571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 76 - 211
Target Start/End: Complemental strand, 28870806 - 28870672
Alignment:
Q  76 ggttgtgtctcatcttcaattgccaaattcttgcacttcccagcaaagaaattttcttgattcatcattgttaagttgaattcttgcaggtcttctttac 175  Q
    ||||||||| ||||||||||| ||||| ||||| |||||  ||| ||| ||||||  || |||||||||||||||||||| ||||| ||||||| |||||    
T  28870806 ggttgtgtcccatcttcaatttccaaaatcttgaacttctgagccaaggaatttttgtg-ttcatcattgttaagttgaactcttgtaggtcttgtttac 28870708  T
Q  176 atacccgccgatacccgcaactcttcacctccaaac 211  Q
    ||||||  ||||||||||||||||||||||| ||||    
T  28870707 atacccaacgatacccgcaactcttcacctcaaaac 28870672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 88 - 205
Target Start/End: Original strand, 33407756 - 33407873
Alignment:
Q  88 tcttcaattgccaaattcttgcacttcccagcaaagaaattttcttgattcatcattgttaagttgaattcttgcaggtcttctttacatacccgccgat 187  Q
    ||||||||| ||||| |||||||||||  ||| ||| ||||||| ||||||||||||||||||||||| | ||| ||||||| |||||||||||  | ||    
T  33407756 tcttcaatttccaaaatcttgcacttctgagccaaggaattttcgtgattcatcattgttaagttgaacttttgtaggtcttgtttacatacccaactat 33407855  T
Q  188 acccgcaactcttcacct 205  Q
    ||||||| ||||||||||    
T  33407856 acccgcagctcttcacct 33407873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 88 - 208
Target Start/End: Original strand, 33396806 - 33396926
Alignment:
Q  88 tcttcaattgccaaattcttgcacttcccagcaaagaaattttcttgattcatcattgttaagttgaattcttgcaggtcttctttacatacccgccgat 187  Q
    ||||||||| ||||| |||||||||||  | | ||| ||||||| ||||||||||||||||||||||| | ||| ||||||| |||||||||||  | ||    
T  33396806 tcttcaatttccaaaatcttgcacttctgaaccaaggaattttcatgattcatcattgttaagttgaacttttgtaggtcttgtttacatacccaactat 33396905  T
Q  188 acccgcaactcttcacctcca 208  Q
    ||| ||| |||||||||||||    
T  33396906 acctgcagctcttcacctcca 33396926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 91 - 328
Target Start/End: Original strand, 33271219 - 33271456
Alignment:
Q  91 tcaattgccaaattcttgcacttcccagcaaagaaattttcttgattcatcattgttaagttgaattcttgcaggtcttctttacatacccgccgatacc 190  Q
    |||||||||||| |||| || ||   ||| ||| ||||||| ||||||| ||||||||  ||||| ||||| ||||||| |||||||| ||  |||||||    
T  33271219 tcaattgccaaaatcttacattttggagccaaggaattttcgtgattcagcattgttatattgaactcttgtaggtcttgtttacatatccaacgatacc 33271318  T
Q  191 cgcaactcttcacctccaaactaaaatcttcaccctcaaaaatattaa-aatggattttttcaaattcactataggactctcgggggaagtagattatcc 289  Q
    |||||||||||||||||| ||  ||  ||||||||  | | ||  ||| ||  ||| |||||||||| |  ||||||| |||| |||| | |||| ||||    
T  33271319 cgcaactcttcacctccatacccaagccttcaccc-aacacatcgtaacaacagatgttttcaaatttatcataggaccctcgagggaggaagatcatcc 33271417  T
Q  290 ataggtgacttgatttggtcataacaagacctccattga 328  Q
    |||||||||||||||||||| ||| ||||| ||| ||||    
T  33271418 ataggtgacttgatttggtcgtaataagacttcctttga 33271456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 275 - 335
Target Start/End: Original strand, 33358496 - 33358556
Alignment:
Q  275 ggaagtagattatccataggtgacttgatttggtcataacaagacctccattgagaattac 335  Q
    |||||||||||||||| |||||||||||||||| | ||| |||||||||||||||||||||    
T  33358496 ggaagtagattatccacaggtgacttgatttgggcgtaataagacctccattgagaattac 33358556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 32 - 115
Target Start/End: Complemental strand, 31563483 - 31563400
Alignment:
Q  32 ttatgactcttgagatgaatgattcttgttcttgttccggttctggttgtgtctcatcttcaattgccaaattcttgcacttcc 115  Q
    ||||||||  ||||||||| |||| |||||||  || | ||| ||||||||||||||||||||||||||||||||| |||||||    
T  31563483 ttatgacttatgagatgaaagattattgttctgcttgcagttgtggttgtgtctcatcttcaattgccaaattctttcacttcc 31563400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 76 - 207
Target Start/End: Original strand, 33281096 - 33281227
Alignment:
Q  76 ggttgtgtctcatcttcaattgccaaattcttgcacttcccagcaaagaaattttcttgattcatcattgttaagttgaattcttgcaggtcttctttac 175  Q
    ||||||||| ||||||||||| ||||| |||||||||||  ||| ||| ||  ||| |||||||| ||||||||  |||| ||||| ||||||| |||||    
T  33281096 ggttgtgtcccatcttcaatttccaaaatcttgcacttctgagccaaggaagcttcatgattcattattgttaaactgaactcttgtaggtcttgtttac 33281195  T
Q  176 atacccgccgatacccgcaactcttcacctcc 207  Q
    |||  |  |||| | |||||||||||||||||    
T  33281196 atattcaacgatgcacgcaactcttcacctcc 33281227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 266 - 319
Target Start/End: Original strand, 33057135 - 33057188
Alignment:
Q  266 actctcgggggaagtagattatccataggtgacttgatttggtcataacaagac 319  Q
    |||||||||| |||||||| |||||||||||||||||||||||| |||||||||    
T  33057135 actctcggggtaagtagataatccataggtgacttgatttggtcgtaacaagac 33057188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 69 - 211
Target Start/End: Original strand, 33056935 - 33057074
Alignment:
Q  69 cggttctggttgtgtctcatcttcaattgccaaattcttgcacttcccagcaaagaaattttcttgattcatcattgttaagttgaattcttgcaggtct 168  Q
    ||||||||||||||||||||||||||||| |||| | ||||||||   ||  ||| ||||||  |||||||| |   |||| ||||||||||| |  |||    
T  33056935 cggttctggttgtgtctcatcttcaattgtcaaaattttgcactttggagttaaggaatttttgtgattcatga---ttaaattgaattcttgtatatct 33057031  T
Q  169 tctttacatacccgccgatacccgcaactcttcacctccaaac 211  Q
    | |||||||||||  ||||| ||||||||||  ||||||||||    
T  33057032 tgtttacatacccaacgataaccgcaactctcgacctccaaac 33057074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 309
Target Start/End: Complemental strand, 31563307 - 31563226
Alignment:
Q  228 aaaaatattaaaatggattttttcaaattcactataggactctcgggggaagtagattatccataggtgacttgatttggtc 309  Q
    |||||| | |||||||||||||  |||||||  |   ||| |||| ||||||||||||||||||||||||||||||||||||    
T  31563307 aaaaatgtcaaaatggatttttcgaaattcatgacgtgaccctcgagggaagtagattatccataggtgacttgatttggtc 31563226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 328
Target Start/End: Original strand, 33398651 - 33398718
Alignment:
Q  261 ataggactctcgggggaagtagattatccataggtgacttgatttggtcataacaagacctccattga 328  Q
    |||||| |||||||||| ||||  |||||||||||||||||||| |||| |||||||| ||| |||||    
T  33398651 ataggaatctcgggggatgtaggctatccataggtgacttgattcggtcgtaacaagatctctattga 33398718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 335
Target Start/End: Complemental strand, 28870622 - 28870548
Alignment:
Q  261 ataggactctcgggggaagtagattatccataggtgacttgatttggtcataacaagacctccattgagaattac 335  Q
    |||| |||||||||||||||||| ||  ||||||||||||||||||||| ||| |||| ||| || || ||||||    
T  28870622 atagtactctcgggggaagtagactagtcataggtgacttgatttggtcgtaataagatctctatcgataattac 28870548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 305
Target Start/End: Original strand, 33262175 - 33262219
Alignment:
Q  261 ataggactctcgggggaagtagattatccataggtgacttgattt 305  Q
    ||||||||||||||| |||||||||| ||| ||||||||||||||    
T  33262175 ataggactctcggggtaagtagattagccacaggtgacttgattt 33262219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 71 - 335
Target Start/End: Complemental strand, 17441538 - 17441268
Alignment:
Q  71 gttctggttgtgtctcatcttcaattgccaaattcttgcacttcccagcaaagaaattttcttgattcatcattgttaagttgaattcttgcaggtcttc 170  Q
    |||||||||||||||||||||||||||||||| |||||||||||  ||| |||   ||||| ||||||||||||||||||||||| ||||| |||||||     
T  17441538 gttctggttgtgtctcatcttcaattgccaaaatcttgcacttctgagccaaggttttttcgtgattcatcattgttaagttgaactcttgtaggtcttg 17441439  T
Q  171 tttacatacccgccgatacccgcaactcttcacctccaaactaaaatcttcaccctcaaaaatattaaaatggattttttcaaattcactataggactct 270  Q
    |||||||||||  ||||||||||||||||||||||||| ||  ||| |||  ||||||||||| | |||| |||||| |  |||| ||  |||||||||     
T  17441438 tttacatacccaacgatacccgcaactcttcacctccatacccaaagcttgcccctcaaaaatttcaaaacggatttctcgaaatgcatgataggactca 17441339  T
Q  271 cgggggaagtagattatccataggtgacttgatttgg------tcataacaagacctccattgagaattac 335  Q
    | | |||||||||||||||||| ||||||||||||||      || ||||||||| |||||||||||||||    
T  17441338 cagtggaagtagattatccatatgtgacttgatttggttgttatcgtaacaagacttccattgagaattac 17441268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 88 - 181
Target Start/End: Complemental strand, 17447048 - 17446955
Alignment:
Q  88 tcttcaattgccaaattcttgcacttcccagcaaagaaattttcttgattcatcattgttaagttgaattcttgcaggtcttctttacataccc 181  Q
    ||||||||| | ||| |||||||||||  ||| ||| ||||||| | ||||| ||||||||||||||| ||||| ||||||| |||||||||||    
T  17447048 tcttcaatttcaaaaatcttgcacttctgagccaaggaattttcgttattcaacattgttaagttgaactcttgtaggtcttgtttacataccc 17446955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 81; Significance: 5e-38; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 15 - 208
Target Start/End: Original strand, 5691 - 5886
Alignment:
Q  15 tttcttctctgtgaagt--ttatgactcttgagatgaatgattcttgttcttgttccggttctggttgtgtctcatcttcaattgccaaattcttgcact 112  Q
    |||||||||||||||||  ||||||||  |||| |||||||||||||||||  ||  |||| |||||||||||||||||||||||||||| |||| || |    
T  5691 tttcttctctgtgaagtagttatgacttgtgaggtgaatgattcttgttctgattgtggttgtggttgtgtctcatcttcaattgccaaaatcttacatt 5790  T
Q  113 tcccagcaaagaaattttcttgattcatcattgttaagttgaattcttgcaggtcttctttacatacccgccgatacccgcaactcttcacctcca 208  Q
    ||  ||| ||| | ||||| ||||||||||||||||||||||| ||||| | || || |||||||||||  ||||||||||||| |||||| ||||    
T  5791 tcgaagccaaggatttttcatgattcatcattgttaagttgaactcttgtaagttttgtttacatacccaacgatacccgcaacacttcacatcca 5886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 76 - 207
Target Start/End: Complemental strand, 13156 - 13025
Alignment:
Q  76 ggttgtgtctcatcttcaattgccaaattcttgcacttcccagcaaagaaattttcttgattcatcattgttaagttgaattcttgcaggtcttctttac 175  Q
    ||||||||| ||||||||||| ||||| |||||||||||  ||| ||| ||  ||| |||||||| ||||||||  |||| ||||| ||||||| |||||    
T  13156 ggttgtgtcccatcttcaatttccaaaatcttgcacttctgagccaaggaagcttcatgattcattattgttaaactgaactcttgtaggtcttgtttac 13057  T
Q  176 atacccgccgatacccgcaactcttcacctcc 207  Q
    |||  |  |||| | |||||||||||||||||    
T  13056 atattcaacgatgcacgcaactcttcacctcc 13025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 309
Target Start/End: Original strand, 5945 - 5993
Alignment:
Q  261 ataggactctcgggggaagtagattatccataggtgacttgatttggtc 309  Q
    |||| |||||||||| ||||||| || ||||||||||||||||||||||    
T  5945 atagtactctcggggaaagtagactagccataggtgacttgatttggtc 5993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 70 - 208
Target Start/End: Original strand, 2 - 140
Alignment:
Q  70 ggttctggttgtgtctcatcttcaattgccaaattcttgcacttcccagcaaagaaattttcttgattcatcattgttaagttgaattcttgcaggtctt 169  Q
    |||| |||||||||||||||||||||||||||| |||| || |||  ||| ||| | ||||| ||||||||||||||||||||||| ||||| | || ||    
T  2 ggttgtggttgtgtctcatcttcaattgccaaaatcttacatttcgaagccaaggatttttcatgattcatcattgttaagttgaactcttgtaagtttt 101  T
Q  170 ctttacatacccgccgatacccgcaactcttcacctcca 208  Q
     |||||||||||  ||||||||||||| |||||| ||||    
T  102 gtttacatacccaacgatacccgcaacacttcacatcca 140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 309
Target Start/End: Original strand, 199 - 247
Alignment:
Q  261 ataggactctcgggggaagtagattatccataggtgacttgatttggtc 309  Q
    |||| |||||||||| ||||||| || ||||||||||||||||||||||    
T  199 atagtactctcggggaaagtagactagccataggtgacttgatttggtc 247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 31499694 - 31499608
Alignment:
Q  75 tggttgtgtctcatcttcaattgccaaattcttgcacttcccagcaaagaaattttcttgattcatcattgttaagttgaattcttg 161  Q
    |||||||| |||||||||||||||||||  ||||| ||| ||||| |||  ||||   |||||||||||||||||||| || |||||    
T  31499694 tggttgtgcctcatcttcaattgccaaagacttgcgctttccagctaaggtatttctgtgattcatcattgttaagttcaactcttg 31499608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 211
Target Start/End: Complemental strand, 31485355 - 31485290
Alignment:
Q  146 ttaagttgaattcttgcaggtcttctttacatacccgccgatacccgcaactcttcacctccaaac 211  Q
    |||||||||| |||||||| || |  ||| ||||||  |||||||||||||||||||| |||||||    
T  31485355 ttaagttgaactcttgcagatcctgcttaaatacccaacgatacccgcaactcttcacttccaaac 31485290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University