View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21235_low_2 (Length: 927)
Name: NF21235_low_2
Description: NF21235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21235_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 771; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 771; E-Value: 0
Query Start/End: Original strand, 16 - 909
Target Start/End: Complemental strand, 28887753 - 28886859
Alignment:
| Q |
16 |
agagacgttagaaatataagttgattcaattgataaagagttgactcatatcttataaaagtatgagttcaattttcactattaatgtgataacttactt |
115 |
Q |
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|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
28887753 |
agagacgttaaaaatataagttgattcagttgataaagagttgactcatatcttataaaagtatgagttcaattttcactattaatgtgataaattactt |
28887654 |
T |
|
| Q |
116 |
ctttagttaaagtctaccctaacctctggtaaattttaaaactcaactcatctaaaattttctttattaaaaaacaataaaccagatatttatgtgtttc |
215 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||| |
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| T |
28887653 |
ctttagttaaagtctgccctaacctctggtaaattttaaaactcaactcatctaaaattttcattattaaaaaacaataaaacggatatttatgtgtttc |
28887554 |
T |
|
| Q |
216 |
acttaataatttcaattgaaatattttctggacatcaaacannnnnnnn-agaggtagacatcaaacagttatcaaatactaaaaagcaaaaacacaatc |
314 |
Q |
| |
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| T |
28887553 |
acttaataatttcaattgaaatattttctagacatcaaacatttttttttagaggtagacatcaaacaattatcaaatactaaaaagcaaaaacacaatc |
28887454 |
T |
|
| Q |
315 |
aaacaagtcataattatatattgagtaatgtatatacattaaaaactcacattttgttggggggaaagtgaatgggatatcattttccttcccttaaacc |
414 |
Q |
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| T |
28887453 |
aaacaagtcataattatatattgagtaatgtatatactttaaaaactcacatgttgttgggggaaaagtgaatgggatatcattttccttcccttaaacc |
28887354 |
T |
|
| Q |
415 |
aactattattagtatgtgagtgacaacgaagtcacaaagtttatcatctcttttcatacatgaccttcttgaaagtcagctccacttccttctattgtga |
514 |
Q |
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| T |
28887353 |
aactattattagtatgtgagtgacaacgaagtcacaaagtttatcatctcttttcatacatgaccttcttgaaagccagctccacttccttctattgtga |
28887254 |
T |
|
| Q |
515 |
tatcatgtggaacatcaccattatgaatagtcccactagaaccaagagccaactttaagacatcatattctccatccacccaaaccaaaccctcctttgg |
614 |
Q |
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|||||| || ||||||||||||||||||||| | | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
28887253 |
tatcatctgaaacatcaccattatgaatagttgcgcaagaaccaagagccaactttaagatatcatattctccatccacccaaaccaaaccctcctttgg |
28887154 |
T |
|
| Q |
615 |
taggttgatagagatactataatagattaaacatgccaagataggtccaacccaaaaaacccaatgaccattccataacgagcctccatgaatcaacgcc |
714 |
Q |
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| T |
28887153 |
taggttgatagagatactataatagattaaacatgccaagataggtccaacccaaaaaacccaatgaccattccataacgagcctccatgaatcaacgcc |
28887054 |
T |
|
| Q |
715 |
gcgcctaagcatcttgcagggtttagcccaacaccagcataaccggcccgacctgttacagttatcgacacaaaaactgccaatgccatggcaccagcta |
814 |
Q |
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| T |
28887053 |
gcgcctaagcatcttgccgggtttagcccaacaccagcataaccggcccgacccgttatagttatcgacacaaaaactgccaatgccatggcaccagcta |
28886954 |
T |
|
| Q |
815 |
tcaccaagcataccattgtcaaccccaaattctttgacatctttttgtcaaaacctaacgtgacacccaaaaagagtaccaaaaatgtacaagag |
909 |
Q |
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| T |
28886953 |
tcaccaagcataccattgtcaaccccaaattctttgacatctttttgtcaaaacctaacgtgacacccaaaaagagtaccaaaaatgtacaagag |
28886859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 267; E-Value: 1e-148
Query Start/End: Original strand, 350 - 909
Target Start/End: Complemental strand, 28882411 - 28881854
Alignment:
| Q |
350 |
acattaaaaactcacattttgttggggggaaa-gtgaatgggatatcattttccttcccttaaaccaactattattagtatgtgagtgacaacgaagtca |
448 |
Q |
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|||||||||||| | ||||| |||||||||| ||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
28882411 |
acattaaaaacttatattttaatggggggaaaagtgaatgagatatcatttcccttcccttaaaccaactattactagtatgtgagtgacaacaaagtca |
28882312 |
T |
|
| Q |
449 |
caaagtttatcatctcttttcatacatgaccttcttgaaagtcagctccacttccttctattgtgatatcatgtggaacatcaccattatgaatagtccc |
548 |
Q |
| |
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|||||||||||||| ||||||||||||| ||| || || | | ||| |||||||||||||||||||| | || ||||||||| ||||||||| |
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| T |
28882311 |
caaagtttatcatcacttttcatacatggactt---gatagccttgtgcacctccttctattgtgatatcatttaaaatgtcaccattaggaatagtcct |
28882215 |
T |
|
| Q |
549 |
actagaaccaagagccaactttaagacatcatattctccatccacccaaaccaaaccctcctttggtaggttgatagagatactataatagattaaacat |
648 |
Q |
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|| ||||||||||| || |||||||||| |||||||| |||| ||||||| || | || || |||||||||||||||| ||||||||||| ||||||| |
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| T |
28882214 |
acaagaaccaagaggcagctttaagacaacatattcttcatcatcccaaactgaaacttctttaggtaggttgatagagacactataatagagtaaacat |
28882115 |
T |
|
| Q |
649 |
gccaagataggtccaacccaaaaaacccaatgaccattccataacgagcctccatgaatcaacgccgcgcctaagcatcttgcagggtttagcccaacac |
748 |
Q |
| |
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||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||| || ||||| | |
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| T |
28882114 |
gccaagataggtccaacccaaaaaagccaatgtccattccataatgagcctccatgaagcaacgccgcgcctaagcatcttgctgggttaagaccaacgc |
28882015 |
T |
|
| Q |
749 |
cagcataaccggcccgacctgttacagttatcgacacaaaaactgccaatgccatggcaccagctatcaccaagcataccattgtcaaccccaaattctt |
848 |
Q |
| |
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|||| ||||||| |||||||| ||| ||||| |||| ||| |||||||||||||||| |||||||| |||||| || |||| || ||| ||||||||||| |
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| T |
28882014 |
cagcgtaaccggtccgacctgataccgttatagacaaaaatactgccaatgccatggaaccagctaccaccaaacacaccaatggcaagcccaaattctt |
28881915 |
T |
|
| Q |
849 |
tgacatctttttgtcaaaacctaacgtgacacccaaaaagagtaccaaaaatgtacaagag |
909 |
Q |
| |
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|||| | |||||||||||| | || ||||||||||||||||||||||||||||| |||||| |
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| T |
28881914 |
tgacctttttttgtcaaaagccaatgtgacacccaaaaagagtaccaaaaatgtgcaagag |
28881854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 543 - 617
Target Start/End: Complemental strand, 28889169 - 28889095
Alignment:
| Q |
543 |
agtcccactagaaccaagagccaactttaagacatcatattctccatccacccaaaccaaaccctcctttggtag |
617 |
Q |
| |
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|||||||| | |||| | ||||||| |||||| || |||||||||||| |||||||||||||||||||| ||||| |
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| T |
28889169 |
agtcccacaaaaacccatagccaaccttaagatatgatattctccatcaacccaaaccaaaccctccttaggtag |
28889095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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