View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21235_low_20 (Length: 374)
Name: NF21235_low_20
Description: NF21235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21235_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 153 - 279
Target Start/End: Complemental strand, 8060435 - 8060309
Alignment:
| Q |
153 |
ctctactctagctagttcagcaattcttctctctagctcatgtatacataagttataatacatacattggtaagcttagtgagtccttatcatgcaatat |
252 |
Q |
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| T |
8060435 |
ctctactctagctagttcagcaattcttctctctagctcatgtatacataagttataatacatacattggtaagcttagtgagtccttatcatgcaatat |
8060336 |
T |
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| Q |
253 |
catacaattaactattttgttatattt |
279 |
Q |
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| T |
8060335 |
catacaattaactattttgttatattt |
8060309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 280 - 371
Target Start/End: Complemental strand, 8060278 - 8060187
Alignment:
| Q |
280 |
acttacacactttaaacttagccataatcacatagacatatggcatatagcaatagaaatagaagtaccttttaagtttcatccctttgcat |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8060278 |
acttacacactttaaacttagccataatcacatagacatatggcatatagcaatagaaatagaagtaccttttaagtttcatccctttgcat |
8060187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 38 - 116
Target Start/End: Complemental strand, 8060515 - 8060437
Alignment:
| Q |
38 |
aaattggtaaatattaaggttccttttgtagctttacctaactaatgcatatgtccccatttaaataaatagaaacata |
116 |
Q |
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| T |
8060515 |
aaattggtaaatattaaggttccttttgtagctttacctaactaatgcatatgtccccatttaaataaatagaaacata |
8060437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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