View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21235_low_23 (Length: 364)
Name: NF21235_low_23
Description: NF21235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21235_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 134; Significance: 1e-69; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 156 - 347
Target Start/End: Complemental strand, 2811917 - 2811719
Alignment:
| Q |
156 |
aaatagattcaaagaaattgaacactgagaagtgagaggatgagagaagctttggtgtgtaaatttataggcaaggttgtgaatgactagttg-----tg |
250 |
Q |
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| T |
2811917 |
aaatagattcaaagaaattgaacactgagaagtgagaggctgagagaagctt-ggtgtgtcaatttataggcaaggttgtgaatgactagttggtctttg |
2811819 |
T |
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| Q |
251 |
gatatttactattagcaccaccttcttttaatacaccctctcataaggtgtttgtcttttaatt---attaattgaataaagttagtgtctcacacaatt |
347 |
Q |
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| T |
2811818 |
gatatttactattagcaccaccgtctattaatacaccctctcataaggtacttgtcttttaattattattaattgaataaagttagtgtctcacacaatt |
2811719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 2812006 - 2811901
Alignment:
| Q |
17 |
cagagacttaattaaatactaggaatcatagaacaaatccatcatattgttgcagnnnnnnnctcatcaaatgattcattcaacaacgaaaatagattca |
116 |
Q |
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| T |
2812006 |
cagagacttaattaaatactaggaatcatggaacaaatccatcatattgttgcagtttttttctcatcaaatgatccattccataacacaaatagattca |
2811907 |
T |
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| Q |
117 |
aagaaa |
122 |
Q |
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|||||| |
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| T |
2811906 |
aagaaa |
2811901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 2806514 - 2806471
Alignment:
| Q |
28 |
ttaaatactaggaatcatagaacaaatccatcatattgttgcag |
71 |
Q |
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| T |
2806514 |
ttaaatactaagaatcatggaacgaatccatcatattgttgcag |
2806471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 8132726 - 8132683
Alignment:
| Q |
28 |
ttaaatactaggaatcatagaacaaatccatcatattgttgcag |
71 |
Q |
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| T |
8132726 |
ttaaatactaggaatcatggaacgaatccatcgtattgttgcag |
8132683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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