View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21235_low_25 (Length: 331)
Name: NF21235_low_25
Description: NF21235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21235_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 1016524 - 1016732
Alignment:
| Q |
1 |
tgaccgtcttcatcaggaacttgaacatgaagaaaaagaagatgaaaagcagaaacattgttacgaataattttggaaacggtccaatcgaaagcacctt |
100 |
Q |
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| T |
1016524 |
tgaccgtcttcatcaggaacttgaacatgaagaaaaagaagatgaaaagcagaaacattgttacgaatgattttggaaacggtccaatcgaaagcacctt |
1016623 |
T |
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| Q |
101 |
tgctactgattgaaggatgaggataacccttcaagcttgactcgttcactccaatcataactcgtgtcgcttcttctcccatttcttgatttttcactga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1016624 |
tgctactgattgaaggatgaggataacccttcaagcttgactcgttcactccaatcataactcgtgtcgcttcttctcccatttcttgatttttcactga |
1016723 |
T |
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| Q |
201 |
gtcaactcg |
209 |
Q |
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||||||||| |
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| T |
1016724 |
gtcaactcg |
1016732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 33881881 - 33881980
Alignment:
| Q |
7 |
tcttcatcaggaacttgaacatgaagaaaaagaagatgaaaagcagaaacattgttacgaataattttggaaacggtccaatcgaaagcacctttgctac |
106 |
Q |
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||||| ||| |||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||| |||| ||||||||||||||||||||| |
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| T |
33881881 |
tcttcttcaagaacttgaacatgaagaaaaagaagatgaaaaacataaacattgttacgaatgattttggaaatggtctaatcgaaagcacctttgctac |
33881980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 106
Target Start/End: Complemental strand, 52564743 - 52564644
Alignment:
| Q |
7 |
tcttcatcaggaacttgaacatgaagaaaaagaagatgaaaagcagaaacattgttacgaataattttggaaacggtccaatcgaaagcacctttgctac |
106 |
Q |
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||||||||| |||||||||||||||||||||||||||| || || ||| |||||||||||| ||||| |||| ||||||||||||||||||||| |||| |
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| T |
52564743 |
tcttcatcaagaacttgaacatgaagaaaaagaagatgggaaacataaatattgttacgaatgatttttgaaatggtccaatcgaaagcacctttcctac |
52564644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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