View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21235_low_28 (Length: 320)

Name: NF21235_low_28
Description: NF21235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21235_low_28
NF21235_low_28
[»] chr6 (1 HSPs)
chr6 (19-313)||(30616532-30616822)


Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 313
Target Start/End: Original strand, 30616532 - 30616822
Alignment:
Q  19 cctgcttggtttctccatgtcaaactgcaaaatgcaaatttcaaacaacaaacaataacaatctaaaactttgatacatctttcttaatcaaaaaattag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30616532 cctgcttggtttctccatgtcaaactgcaaaatgcaaatttcaaacaacaaacaataacaatctaaaactttgatacatctttcttaatcaaaaaattag 30616631  T
Q  119 ttttgatcatnnnnnnnnnnnnnnncaatcacaatcttagtactattatattatttatgtttcatctttttgtatgatgctgtttaatggctagtatcct 218  Q
    ||||||||||               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30616632 ttttgatcataaaaacaacaa----caatcacaatcttagtactattatattatttatgtttcatctttttgtatgatgctgtttaatggctagtatcct 30616727  T
Q  219 tgtactcaaattagaattaaacttttccttttaattatgacaaaaaattcaaaatgcaaatatatatcaatgccaacaaatacttagaataatct 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30616728 tgtactcaaattagaattaaacttttccttttaattatgacaaaaaattcaaaatgcaaatatatatcaatgccaacaaatacttagaattatct 30616822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University