View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21235_low_29 (Length: 296)
Name: NF21235_low_29
Description: NF21235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21235_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 33197816 - 33198077
Alignment:
| Q |
18 |
caaaatacaacgatgtcgtgtagcgcttccaaatatcaatttctctgaactttgaataagcatagtcacccagtttcaaacttcctatccatgtgtagcc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33197816 |
caaaatacaacgatgtcgtgtagcgcttccaaatatcaatttctctgaactttgaataagcatagtcacccagtttcaaacttcctatccatgtgtagcc |
33197915 |
T |
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| Q |
118 |
ctcttgggattcaggtagtgtagtagccaaatagtagaatatgcatgctgctgtgtgagtgcagtagagttcaacaactaaaagtttcacaatccgagca |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33197916 |
ctcttgggattcaggtagtgtagtagccaaatagtagaatatgcaggctgctgtgtgagtgcagtagagttcaacaactaaaagtttcacaatccgagca |
33198015 |
T |
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| Q |
218 |
ataatgtaattgacacgtatatctttctccaaattcctgaaaaattgcacaactctctctgc |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33198016 |
ataatgtaattgacacgtatatctttctccaaattcctgaaaaattgcacaactctctctgc |
33198077 |
T |
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