View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21235_low_3 (Length: 848)
Name: NF21235_low_3
Description: NF21235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21235_low_3 |
 | |
|
| [»] scaffold1207 (1 HSPs) |
| | |
|
| [»] scaffold0734 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 575; Significance: 0; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 17 - 695
Target Start/End: Original strand, 11170562 - 11171240
Alignment:
| Q |
17 |
cagtcttcagcctcttaatggctcttggagatccactaatatcgagtttatgttttctcaagaactctttcacaaaatggttcaccattgcattatcaaa |
116 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11170562 |
cagtcttcagcctcctaatggctcttggatctccactaatgtcgagtttatgttttctcaagaactctttcacaaaatggttcaccattgcattatcaaa |
11170661 |
T |
|
| Q |
117 |
gtcttgtcccccgaggtgagtgtctcctccagtggccttaacattgatatcaccattctcaaatgtgagaacagacacgtccaaagtaccaccacctaag |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11170662 |
gtcttgtcccccgaggtgagtgtctcctccagtggccttaacattgatatcaccattctcaaatgtgagaacagacacgtccaaagtaccaccacctaag |
11170761 |
T |
|
| Q |
217 |
tcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacat |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11170762 |
tcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcaaaacat |
11170861 |
T |
|
| Q |
317 |
tgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaag |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
11170862 |
tgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatcctccactattgatccaag |
11170961 |
T |
|
| Q |
417 |
gtaagcttcagctatctcggccatttttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcatg |
516 |
Q |
| |
|
| | | ||| ||||||||| |||||| |||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
11170962 |
gaaggtttctgctatctcgcgcattttcaccaataccatggatgagatttcttcagcagcaaaatgtttttcctcgtcattatagttaacaacaatcatg |
11171061 |
T |
|
| Q |
517 |
ggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcgcaaaatttccgaccaattagcctctttgcat |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
11171062 |
ggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcactaaatttccgaccaattagcctctttgcat |
11171161 |
T |
|
| Q |
617 |
ctacaaaacaaaagagagttgtgtacactatgnnnnnnnnttggatcgctttatgaattaatcattctatgtggatttg |
695 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11171162 |
ctacaaaacaaaagagagttgtgtacactatgaaaaacaattggatcgctttatgaattaatcattctatgtggatttg |
11171240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 17 - 633
Target Start/End: Original strand, 11275946 - 11276562
Alignment:
| Q |
17 |
cagtcttcagcctcttaatggctcttggagatccactaatatcgagtttatgttttctcaagaactctttcacaaaatggttcaccattgcattatcaaa |
116 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||| || |||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11275946 |
cagtcttcagcctcctaatggctcttggatctccactaatgtcatttttatgcttcctcaagaactctttcacaaaatggttcaccattgcattatcaaa |
11276045 |
T |
|
| Q |
117 |
gtcttgtcccccgaggtgagtgtctcctccagtggccttaacattgatatcaccattctcaaatgtgagaacagacacgtccaaagtaccaccacctaag |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
11276046 |
gtcttgtcccccgaggtgagtgtctcctccaatggccttaacattgatatcaccattctcaaaagtgagaacagacacgtccaaagtaccaccacctaag |
11276145 |
T |
|
| Q |
217 |
tcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacat |
316 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||| | |||||||||||| | |
|
|
| T |
11276146 |
tcaaatatgaaaacatttctacatccatgattaaatggtttcgtgttaaagccatatgcaattgcagctgcagtaggctcatttattattcgcataacgt |
11276245 |
T |
|
| Q |
317 |
tgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaag |
416 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
11276246 |
ttaggccagcaatagcacccgcatctcgagtagactggcgctgtgagtcattaaagtatgcaggcacagttataacaacatcctccactgttaatccaag |
11276345 |
T |
|
| Q |
417 |
gtaagcttcagctatctcggccatttttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcatg |
516 |
Q |
| |
|
| | ||||| ||||||||| |||||| ||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11276346 |
gaaggcttctgctatctcgcgcattttcgccaataccatggatgagatttcttcagcagtaaaatgcttttcctcgtcattatagttaacaacaatcatg |
11276445 |
T |
|
| Q |
517 |
ggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcgcaaaatttccgaccaattagcctctttgcat |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
11276446 |
ggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcactaaatttccgaccaattagcctctttgcat |
11276545 |
T |
|
| Q |
617 |
ctacaaaacaaaagaga |
633 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
11276546 |
ctacaaaacaaaagaga |
11276562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 17 - 645
Target Start/End: Original strand, 11209384 - 11210012
Alignment:
| Q |
17 |
cagtcttcagcctcttaatggctcttggagatccactaatatcgagtttatgttttctcaagaactctttcacaaaatggttcaccattgcattatcaaa |
116 |
Q |
| |
|
|||||||||||||| ||| |||||||||| ||||||||| || | ||| | || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11209384 |
cagtcttcagcctcctaagggctcttggatttccactaatgtccattttttccttcctcaagaactctttcacaaaatggttcaccattgcattatcaaa |
11209483 |
T |
|
| Q |
117 |
gtcttgtcccccgaggtgagtgtctcctccagtggccttaacattgatatcaccattctcaaatgtgagaacagacacgtccaaagtaccaccacctaag |
216 |
Q |
| |
|
|||||||||||||||||||||||||||| || | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11209484 |
gtcttgtcccccgaggtgagtgtctcctgcaatagccttaacattgatatcaccatcctcaaatgtgagaacagacacgtccaaagtaccaccacctaag |
11209583 |
T |
|
| Q |
217 |
tcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacat |
316 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11209584 |
tcaaatatgaaaacatttctacgtccatgattaaatggtttcatgccaaagccatatgcaattgcagctgcagtaggctcattgagtattcgcaaaacat |
11209683 |
T |
|
| Q |
317 |
tgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaag |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
11209684 |
tgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatcatccactgttgatccaag |
11209783 |
T |
|
| Q |
417 |
gtaagcttcagctatctcggccatttttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcatg |
516 |
Q |
| |
|
| | ||||| ||| |||| |||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
11209784 |
gaaggcttctgctgtctctcgcattttcgccaataccatggatgagatttcttcagcagcaaaatgcttttcctcgtctttatagttaacaacaatcatg |
11209883 |
T |
|
| Q |
517 |
ggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcgcaaaatttccgaccaattagcctctttgcat |
616 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
11209884 |
ggtttgtcatttaggtcgccaattactttgaatggccacaacttcacatcactttctactatggggtcgcaaaatttccgaccaattagcctctttgcat |
11209983 |
T |
|
| Q |
617 |
ctacaaaacaaaagagagttgtgtacact |
645 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
11209984 |
ctacaaaacaaaagagagttgtgtacact |
11210012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 21 - 628
Target Start/End: Original strand, 11196719 - 11197326
Alignment:
| Q |
21 |
cttcagcctcttaatggctcttggagatccactaatatcgagtttatgttttctcaagaactctttcacaaaatggttcaccattgcattatcaaagtct |
120 |
Q |
| |
|
||||| |||| ||| |||||||||| ||||||||| |||| ||||| || ||| |||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
11196719 |
cttcaacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaactctttcacaaaatggttcaccattgtattatcaaagtct |
11196818 |
T |
|
| Q |
121 |
tgtcccccgaggtgagtgtctcctccagtggccttaacattgatatcaccattctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaa |
220 |
Q |
| |
|
|||||||| ||||||||||||||| || | ||||||||||||||| |||| |||||||||||||||| |||||||||| ||||||||||||||| |||| |
|
|
| T |
11196819 |
tgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcaccgttctcaaatgtgagaatggacacgtccagagtaccaccacctaaatcaa |
11196918 |
T |
|
| Q |
221 |
aaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgag |
320 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||||| |||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
11196919 |
aaatgaaaacatgtctacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgag |
11197018 |
T |
|
| Q |
321 |
gccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggtaa |
420 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11197019 |
gccagcaataacacccgcatctcgagtggactggcgttgtgagtcattaaagtaagcaggcacagttataacaacatccttcactgttgatccaaggtaa |
11197118 |
T |
|
| Q |
421 |
gcttcagctatctcggccatttttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtt |
520 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11197119 |
gcttcagctatctcggccatttttgccaataccatcgatgagatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtt |
11197218 |
T |
|
| Q |
521 |
tgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcgcaaaatttccgaccaattagcctctttgcatctac |
620 |
Q |
| |
|
||||||| ||||| |||||||||||||| |||||| |||||| |||||||||||| || | |||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
11197219 |
tgtcattgaggtcgccaattactttgaagggccacgacttcatatcactttgtacgattgagtcgcaaaacttcctaccaattagcctctttgcatctac |
11197318 |
T |
|
| Q |
621 |
aaaacaaa |
628 |
Q |
| |
|
|||||||| |
|
|
| T |
11197319 |
aaaacaaa |
11197326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 21 - 648
Target Start/End: Original strand, 11156266 - 11156895
Alignment:
| Q |
21 |
cttcagcctcttaatggctcttggagatccactaatatcgagtttatgttttctcaagaactctttcacaaaatggttcaccattgcattatcaaagtct |
120 |
Q |
| |
|
||||| |||| ||| |||||||||| ||||||||| |||| ||||| || ||| ||||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
11156266 |
cttcaacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaactcattcacaaaatggttcaccattgtattatcaaagtct |
11156365 |
T |
|
| Q |
121 |
tgtcccccgaggtgagtgtctcctccagtggccttaacattgatatcaccattctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaa |
220 |
Q |
| |
|
|||||||| ||||||||||||||| || | ||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||| ||||| |||| |
|
|
| T |
11156366 |
tgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcacctttctcaaatgtgagaatggacacgtccaaagtaccacctcctaaatcaa |
11156465 |
T |
|
| Q |
221 |
aaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgag |
320 |
Q |
| |
|
|||||||||||| | |||||||||||||||| ||||||| |||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
11156466 |
aaatgaaaacatgtttacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgag |
11156565 |
T |
|
| Q |
321 |
gccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggtaa |
420 |
Q |
| |
|
|||||||||| ||||||||||| | || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11156566 |
gccagcaataacacccgcatcttgggtggactggcgttgtgagtcattaaagtaagcaggcacagttataacaacatccttcactgttgatccaaggtaa |
11156665 |
T |
|
| Q |
421 |
gcttcagctatctcggccatttttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtt |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
11156666 |
acttcagctatctcggccatttttgccaataccatcgatgagatttcttcagcagcaaaatgcttttcctcgtctttatagttaacaacaatcatgggtt |
11156765 |
T |
|
| Q |
521 |
tgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcgcaaaatttccgaccaattagcctctttgcatctac |
620 |
Q |
| |
|
||||||| |||| |||||||||||||| |||||| |||||| |||||||||||| || | |||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
11156766 |
tgtcattgaggttgccaattactttgaagggccacgacttcatatcactttgtacgattgagtcgcaaaacttcctaccaattagcctctttgcatctac |
11156865 |
T |
|
| Q |
621 |
aaaacaa--aagagagttgtgtacactatg |
648 |
Q |
| |
|
||||||| || ||||||| |||||||||| |
|
|
| T |
11156866 |
aaaacaaacaaaagagttgagtacactatg |
11156895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 27 - 527
Target Start/End: Original strand, 11199890 - 11200394
Alignment:
| Q |
27 |
cctcttaatggctcttggagatccactaatatcgagtttatgttttctcaagaactctttcacaaaatggttcaccattgcattatcaaagtcttgtccc |
126 |
Q |
| |
|
|||| ||| |||||||||| ||||||||| |||| ||||| || ||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
11199890 |
cctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaactctttcacaaaatggttcaccattgtattatcaaagtcttgtccc |
11199989 |
T |
|
| Q |
127 |
ccgaggtgagtgtctcctccagtggccttaacattgatatcaccattctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatga |
226 |
Q |
| |
|
|| ||||||||||||||| || | ||||||||||||||| ||||||||||||||||||||| ||||| |||| ||||||||||||||| | |||||||| |
|
|
| T |
11199990 |
ccaaggtgagtgtctcctgcaatcgccttaacattgatagcaccattctcaaatgtgagaatggacacatccagagtaccaccacctaaataaaaaatga |
11200089 |
T |
|
| Q |
227 |
aaacatttctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagc |
326 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
11200090 |
aaacatttctacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcaaaacattgaggccagc |
11200189 |
T |
|
| Q |
327 |
aatagcacccgcatctcgagtagactgg----cgttgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggtaagc |
422 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11200190 |
aatagcacccgcatctcaagtagactggcgtacgttgtgaatcattaaagtatgtaggcacaattataacaacatccttcactgttgatccaaggtaagc |
11200289 |
T |
|
| Q |
423 |
ttcagctatctcggccatttttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttg |
522 |
Q |
| |
|
|||||| |||||| ||||||||| ||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11200290 |
ttcagcaatctcgcccatttttgtcaataccatggatgagatttcttctgcagcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttg |
11200389 |
T |
|
| Q |
523 |
tcatt |
527 |
Q |
| |
|
||||| |
|
|
| T |
11200390 |
tcatt |
11200394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 151 - 628
Target Start/End: Complemental strand, 11241488 - 11241005
Alignment:
| Q |
151 |
gccttaacattgatatcaccattctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaa |
250 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||| || ||||| | ||||| ||||||||||||||||| |
|
|
| T |
11241488 |
gccttaacattgatagcaccattctcaaatgtgagaatggacacgtccagagtaccaccacctaaatcgaaaattagaacatgtctacatccatgattaa |
11241389 |
T |
|
| Q |
251 |
atggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatctcgagtaga |
350 |
Q |
| |
|
| ||||| || ||||||||||||||||||| |||||||||||||| ||| ||||| || ||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
11241388 |
gagttttcatgttaaggccatatgcaattgcaactgcagtaggctcagtgattattcacaaaactttgaggccagcaatagcacccgcatctcgaataga |
11241289 |
T |
|
| Q |
351 |
ctggcgttgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatctcggccatttttgccaat |
450 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
11241288 |
ctggcgttgtgagtcattaaagtaagcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatcttggccatttttgccaat |
11241189 |
T |
|
| Q |
451 |
accatcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttgtcattcaggtcaccaattactttgaatg |
550 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| | ||||| |||||||||||||||| |||||||||||||| | |
|
|
| T |
11241188 |
accatcgatgagatttcttcagcagcgaaatgcttttcctcgtcattatagttaacaatagtcatgtgtttgtcattcaggtcgccaattactttgaagg |
11241089 |
T |
|
| Q |
551 |
gccacaacttcacatcactttgtactatgggatcgca------aaatttccgaccaattagcctctttgcatctacaaaacaaa |
628 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| || || ||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
11241088 |
gccacaacttcatatcactttgtatgatggggtcacaaaacttaaacttcctaccaattagcctctttgcatctacaaaacaaa |
11241005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 22 - 527
Target Start/End: Original strand, 11161134 - 11161651
Alignment:
| Q |
22 |
ttcagcctcttaatggctcttggagatccactaatatcgagtttatgttttctcaagaactctttcacaaaatggttcaccattgcattatcaaagtctt |
121 |
Q |
| |
|
|||| |||| ||| |||||||||| ||||||||| |||| ||||| || ||| |||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
11161134 |
ttcaacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaactctttcacaaaatggttcaccattgtattatcaaagtctt |
11161233 |
T |
|
| Q |
122 |
gtcccccgaggtgagtgtctcctccagtggccttaacattgatatcaccattctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaa |
221 |
Q |
| |
|
|||||| ||||||||||||||| || | ||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||| | ||| |
|
|
| T |
11161234 |
gtcccctaaggtgagtgtctcctgcaatcgccttaacattgatagcaccaatctcaaatgtgagaatagacacgtccaaagtaccaccacctaaataaaa |
11161333 |
T |
|
| Q |
222 |
aatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggct--------cattgagtattcgcataa |
313 |
Q |
| |
|
||||||||||| | |||||||||||||||| ||||||| |||||| ||||||||||||||| |||||||||||| |||||| || |||||||| |
|
|
| T |
11161334 |
aatgaaaacatgtatacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcatctgcagtaggctagtagagtcattgattactcgcataa |
11161433 |
T |
|
| Q |
314 |
cattgaggccagcaatagcacccgcatctcgagtagactggcgt----tgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttg |
409 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
11161434 |
cattaaggccaacaatagcacccgcatctcgagtagactggcgtacgttgtgaaacattaaagtatgtaggcacaattataacaacatccttcactgttg |
11161533 |
T |
|
| Q |
410 |
atccaaggtaagcttcagctatctcggccatttttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaac |
509 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||| ||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11161534 |
atccaaggtaagcttcagcaatctcgcccatttttgtcaataccatggatgagatttcttctgcagcaaaatgcttttcctcgtcattatagttaacaac |
11161633 |
T |
|
| Q |
510 |
aatcatgggtttgtcatt |
527 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
11161634 |
aatcatgggtttgtcatt |
11161651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 48 - 624
Target Start/End: Original strand, 11133017 - 11133593
Alignment:
| Q |
48 |
tccactaatatcgagtttatgttttctcaagaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctcctcca |
147 |
Q |
| |
|
||||||||| || | |||||| || ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||| || |
|
|
| T |
11133017 |
tccactaatgtcaattttatgcttcctcaagaactctttcacgaaatggttcaccattgtgttatcaaagtcttgtcccccgaggtgagtatctccagca |
11133116 |
T |
|
| Q |
148 |
gtggccttaacattgatatcaccattctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgat |
247 |
Q |
| |
|
||||| ||| |||| || || || |||||||||| |||||| ||||| |||||||| ||||| ||||||| ||||||| | || |||||| |
|
|
| T |
11133117 |
gtggctttagtggtgattccattcttatcgaatgtgagaatagacacatccaatgtaccacctcctaaatcaaaaacaaaaacatgtttatggtcatgat |
11133216 |
T |
|
| Q |
248 |
taaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatctcgagt |
347 |
Q |
| |
|
|||| |||||| |||||| |||||||||||||||||||| |||||||| |||| |||||||||||| ||||| || |||||| |||| ||||||| ||| |
|
|
| T |
11133217 |
taaacggtttcttgtcaagaccatatgcaattgcagctgctgtaggctcgttgattattcgcataacgttgagacctgcaataacacctgcatctctagt |
11133316 |
T |
|
| Q |
348 |
agactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatctcggccatttttgcc |
447 |
Q |
| |
|
|| |||||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||| |||| || ||||| ||||||| | |
|
|
| T |
11133317 |
agcttggcgttgcgagtcattaaagtaagcaggaacagttataacgacatccttcactgttgatccaaggtaaacttctgcaatctcacgaatttttgtc |
11133416 |
T |
|
| Q |
448 |
aataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttgtcattcaggtcaccaattactttga |
547 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||| |||||||| |||| || || |||||||| ||||||||||||| | | ||||||||||||| | |
|
|
| T |
11133417 |
aataccattgatgatatttcctcagcagcaaaatgtttttcctctccattgtaattgacaacaatattgggtttgtcatttatgccaccaattactttaa |
11133516 |
T |
|
| Q |
548 |
atggccacaacttcacatcactttgtactatgggatcgcaaaatttccgaccaattagcctctttgcatctacaaaa |
624 |
Q |
| |
|
|||||||||| |||| |||||| || ||||| || || | ||||| | |||||| |||||||| |||||||||||| |
|
|
| T |
11133517 |
atggccacaatttcatatcactctgaactatagggtcactaaattctctaccaatgagcctcttcgcatctacaaaa |
11133593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 78 - 238
Target Start/End: Complemental strand, 11314848 - 11314688
Alignment:
| Q |
78 |
gaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctcctccagtggccttaacattgatatcaccattctca |
177 |
Q |
| |
|
|||| ||| |||||||| |||||||||| ||||| |||||||||||||| |||||||||||||| ||| |||| |||| ||||| ||||||||||| |
|
|
| T |
11314848 |
gaacacttccacaaaatatttcaccattgtattattgaagtcttgtcccccaaggtgagtgtctccgccaacggccctaactttgatggcaccattctca |
11314749 |
T |
|
| Q |
178 |
aatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctac |
238 |
Q |
| |
|
| |||||||| |||||| ||||||||||| ||||| || || || |||||||||||||||| |
|
|
| T |
11314748 |
agtgtgagaatagacacatccaaagtaccgccacccaaatcgaagatgaaaacatttctac |
11314688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 765 - 835
Target Start/End: Original strand, 11171312 - 11171382
Alignment:
| Q |
765 |
ttaaccccgtaagtaatacaatcttgggattttggtcccttgtaaaaaacaataacaaatcagctcctatg |
835 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
11171312 |
ttaaccccgtaagtaatacaatcttgggattttggtcccttataaaaaacaataacaaatcagctcctatg |
11171382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 11241594 - 11241511
Alignment:
| Q |
21 |
cttcagcctcttaatggctcttggagatccactaatatcgagtttatgttttctcaagaactctttcacaaaatggttcaccat |
104 |
Q |
| |
|
||||| |||| ||| |||||||||| || |||||| |||| ||||| || ||| |||||||||||||||||||||||||||| |
|
|
| T |
11241594 |
cttcaacctcctaagggctcttggatctctactaatgtcgattttatacttcctcgagaactctttcacaaaatggttcaccat |
11241511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 782 - 827
Target Start/End: Original strand, 8382104 - 8382149
Alignment:
| Q |
782 |
acaatcttgggattttggtcccttgtaaaaaacaataacaaatcag |
827 |
Q |
| |
|
||||||||| |||||| |||||| ||||||||||||||||||||| |
|
|
| T |
8382104 |
acaatcttgcaattttgatcccttataaaaaacaataacaaatcag |
8382149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1207 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: scaffold1207
Description:
Target: scaffold1207; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 17 - 694
Target Start/End: Original strand, 880 - 1538
Alignment:
| Q |
17 |
cagtcttcagcctcttaatggctcttggagatccactaatatcgagtttatgttttctcaagaactctttcacaaaatggttcaccattgcattatcaaa |
116 |
Q |
| |
|
|||||||||||||| ||| |||||||||| ||||||||| |||| ||||| || || |||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
880 |
cagtcttcagcctcctaacggctcttggatctccactaatgtcgattttatacttccttaagaacactttcacaaaatggttcaccattgcgttatcaaa |
979 |
T |
|
| Q |
117 |
gtcttgtcccccgaggtgagtgtctcctccagtggccttaacattgatatcaccattctcaaatgtgagaacagacacgtccaaagtaccaccacctaag |
216 |
Q |
| |
|
|||||| |||| |||||||||||||||| || | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
980 |
gtcttgccccctgaggtgagtgtctcctacaatagccttaacattgatatcaccattctcaaatttgagaacagacacgtccaaagtaccaccacctaag |
1079 |
T |
|
| Q |
217 |
tcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacat |
316 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
1080 |
tcaaaaatgaaaacatttctatgtccatgtg---atggttttgtgtcaaagccatatgcaattgcagctgcagtaggctcattgagtattcccaaaacat |
1176 |
T |
|
| Q |
317 |
tgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaag |
416 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1177 |
tgaggccagcaatagcacctgcatctcgagtagattggcgttgtgagtcattaaagtatgcaggcacagttataacaacatcctccactgttgatccaag |
1276 |
T |
|
| Q |
417 |
gtaagcttcagctatctcggccatttttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcatg |
516 |
Q |
| |
|
| | ||||| ||| ||||| |||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1277 |
gaaggcttctgctgtctcgcgcattttcgccaataccatggatgagatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcatg |
1376 |
T |
|
| Q |
517 |
ggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcgcaaaatttccgaccaattagcctctttgcat |
616 |
Q |
| |
|
||||| | | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1377 |
ggtttat------------------gtatgaatggccacaacttcacatcactttctactatgggatcgcaaaatttccgaccaattagcctctttgcat |
1458 |
T |
|
| Q |
617 |
ctacaaaacaaaagagagttgtgtacactatg--nnnnnnnnttggatcgctttatgaattaatcattctatgtggattt |
694 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||| ||||||||||| |
|
|
| T |
1459 |
ctacaaaacaaaagagagttgtgtacactatgaaaaaaacaattgtatcgctttatgtattaatcattttatgtggattt |
1538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 21)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 264 - 342
Target Start/End: Complemental strand, 8382805 - 8382727
Alignment:
| Q |
264 |
aaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct |
342 |
Q |
| |
|
|||||||||||||| ||||| ||||| |||||||||| ||| ||||| ||||||||||||||||| ||||| |||||| |
|
|
| T |
8382805 |
aaggccatatgcaagagcagcggcagttggctcattgattatccgcattacattgaggccagcaatcgcaccagcatct |
8382727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 264 - 342
Target Start/End: Original strand, 8602213 - 8602291
Alignment:
| Q |
264 |
aaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct |
342 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||| ||| ||||| |||||||| |||||||| ||||| |||||| |
|
|
| T |
8602213 |
aaggccatatgcaagagcagctgcagttggctcattgattatccgcattacattgagaccagcaatggcaccagcatct |
8602291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 261 - 342
Target Start/End: Complemental strand, 13333388 - 13333307
Alignment:
| Q |
261 |
gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct |
342 |
Q |
| |
|
|||||||||||||||||| || || |||||||| ||||||| |||||| || | ||| ||||||||||||||||| |||||| |
|
|
| T |
13333388 |
gtcaaggccatatgcaatagctgcagcagtaggttcattgattattcgaatgatattaaggccagcaatagcaccagcatct |
13333307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 261 - 341
Target Start/End: Complemental strand, 10494306 - 10494226
Alignment:
| Q |
261 |
gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc |
341 |
Q |
| |
|
|||||||||||||||||| || || |||||||| ||||||| ||| || || ||||| ||||||||||||||||| ||||| |
|
|
| T |
10494306 |
gtcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaaggccagcaatagcaccagcatc |
10494226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 261 - 341
Target Start/End: Complemental strand, 8585638 - 8585558
Alignment:
| Q |
261 |
gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc |
341 |
Q |
| |
|
|||||||||||||||||| || || ||||| || ||||||| ||| | ||||||||| ||||||||||| ||||| ||||| |
|
|
| T |
8585638 |
gtcaaggccatatgcaatagctgcagcagtgggttcattgattatcctcataacattaaggccagcaatggcaccagcatc |
8585558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 769 - 828
Target Start/End: Original strand, 2407345 - 2407404
Alignment:
| Q |
769 |
ccccgtaagtaatacaatcttgggattttggtcccttgtaaaaaacaataacaaatcagc |
828 |
Q |
| |
|
|||| |||||| ||||||||| |||||||||||| | |||||||||||||||||||||| |
|
|
| T |
2407345 |
ccccctaagtatcacaatcttgcgattttggtcccctataaaaaacaataacaaatcagc |
2407404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 261 - 340
Target Start/End: Original strand, 8628768 - 8628847
Alignment:
| Q |
261 |
gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcat |
340 |
Q |
| |
|
|||||||||||||||||| || || ||||| || ||||||| ||| | ||||||||| ||||||||||| ||||| |||| |
|
|
| T |
8628768 |
gtcaaggccatatgcaatagctgcagcagtggggtcattgattatcctcataacattaaggccagcaatggcaccagcat |
8628847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 782 - 828
Target Start/End: Original strand, 7875716 - 7875762
Alignment:
| Q |
782 |
acaatcttgggattttggtcccttgtaaaaaacaataacaaatcagc |
828 |
Q |
| |
|
||||||||| |||||||||||| | |||||||||||||||||||||| |
|
|
| T |
7875716 |
acaatcttgcgattttggtcccctataaaaaacaataacaaatcagc |
7875762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 261 - 335
Target Start/End: Complemental strand, 27830807 - 27830733
Alignment:
| Q |
261 |
gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacc |
335 |
Q |
| |
|
|||||||||||||||||| || || ||||||||||| | | ||| ||||||||||| ||||||||||| ||||| |
|
|
| T |
27830807 |
gtcaaggccatatgcaatagctgcagcagtaggctcgcttattatccgcataacattaaggccagcaatggcacc |
27830733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 268 - 330
Target Start/End: Complemental strand, 29577594 - 29577532
Alignment:
| Q |
268 |
ccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaata |
330 |
Q |
| |
|
|||||||||| |||||| ||||| || ||||||| ||| ||||| |||||||||||||||||| |
|
|
| T |
29577594 |
ccatatgcaagtgcagcagcagttggttcattgattatccgcattacattgaggccagcaata |
29577532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 261 - 342
Target Start/End: Original strand, 8654686 - 8654767
Alignment:
| Q |
261 |
gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct |
342 |
Q |
| |
|
|||||||||||||||||| || || |||||||| ||||||||||| || || || || || |||||||| ||||| |||||| |
|
|
| T |
8654686 |
gtcaaggccatatgcaatagctgcggcagtaggttcattgagtatccgaatgacgttaagtccagcaatggcaccagcatct |
8654767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 261 - 342
Target Start/End: Original strand, 8667655 - 8667736
Alignment:
| Q |
261 |
gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct |
342 |
Q |
| |
|
|||||||||||||||||| || || |||||||| ||||||| ||| || || ||||| || |||||||||| ||| |||||| |
|
|
| T |
8667655 |
gtcaaggccatatgcaatagctgccgcagtaggttcattgattatccgaatgacattaagtccagcaatagtaccagcatct |
8667736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 262 - 342
Target Start/End: Original strand, 6789749 - 6789829
Alignment:
| Q |
262 |
tcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct |
342 |
Q |
| |
|
|||||||||||||||| ||||| || || || ||||||| |||||| |||||||| || |||||||| ||||| |||||| |
|
|
| T |
6789749 |
tcaaggccatatgcaagagcagcagctgttggttcattgattattcgtataacattaagaccagcaatggcaccagcatct |
6789829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 261 - 341
Target Start/End: Complemental strand, 8671562 - 8671482
Alignment:
| Q |
261 |
gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc |
341 |
Q |
| |
|
|||||||||||||||||| || || |||||||| ||||||| ||| || || ||||| || |||||||||| ||| ||||| |
|
|
| T |
8671562 |
gtcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaagtccagcaatagtaccagcatc |
8671482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 768 - 828
Target Start/End: Original strand, 40352657 - 40352717
Alignment:
| Q |
768 |
accccgtaagtaatacaatcttgggattttggtcccttgtaaaaaacaataacaaatcagc |
828 |
Q |
| |
|
||||| |||||| ||||||||| |||||||||| | | |||||||||||||||||||||| |
|
|
| T |
40352657 |
accccctaagtatcacaatcttgcgattttggtcgcctataaaaaacaataacaaatcagc |
40352717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 268 - 342
Target Start/End: Original strand, 3147515 - 3147589
Alignment:
| Q |
268 |
ccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct |
342 |
Q |
| |
|
||||| ||||| || || |||||||| ||||||| ||| ||||||| ||| |||||||||||| |||| |||||| |
|
|
| T |
3147515 |
ccatacgcaatagctgcagcagtaggttcattgattatccgcataatattaaggccagcaataacaccagcatct |
3147589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 264 - 342
Target Start/End: Complemental strand, 7877662 - 7877584
Alignment:
| Q |
264 |
aaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct |
342 |
Q |
| |
|
|||||||||||||| ||||| ||||| || ||||| | ||| ||||||||||||||||| |||| ||||| |||||| |
|
|
| T |
7877662 |
aaggccatatgcaagggcagcagcagttggttcattaattatccgcataacattgaggccggcaactgcaccagcatct |
7877584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 264 - 342
Target Start/End: Original strand, 8538275 - 8538353
Alignment:
| Q |
264 |
aaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct |
342 |
Q |
| |
|
|||||| ||||||| ||||| || ||||| ||||||| ||| ||||| ||||||||||||||||| |||| |||||| |
|
|
| T |
8538275 |
aaggccgtatgcaagagcagcagctgtaggttcattgattatccgcattacattgaggccagcaatgacaccagcatct |
8538353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 453 - 561
Target Start/End: Original strand, 8647305 - 8647410
Alignment:
| Q |
453 |
catcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttgtcattcaggtcaccaattactttgaatggc |
552 |
Q |
| |
|
||||||||||||||| |||||| | || |||| || || | || || ||||||| |||||||||||||||||||| | ||||| || ||||||||| |
|
|
| T |
8647305 |
catcgatgatatttcctcagcacaataacgcttctcttcacccttgtatttaacaataatcatgggtttgtcattca---ccccaatgaccttgaatggc |
8647401 |
T |
|
| Q |
553 |
cacaacttc |
561 |
Q |
| |
|
||||||||| |
|
|
| T |
8647402 |
cacaacttc |
8647410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 782 - 824
Target Start/End: Original strand, 41415672 - 41415714
Alignment:
| Q |
782 |
acaatcttgggattttggtcccttgtaaaaaacaataacaaat |
824 |
Q |
| |
|
||||||||| |||||||| ||||| |||||||||||||||||| |
|
|
| T |
41415672 |
acaatcttgcgattttggccccttataaaaaacaataacaaat |
41415714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 510 - 619
Target Start/End: Original strand, 3147757 - 3147866
Alignment:
| Q |
510 |
aatcatgggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcgcaaaatttccgaccaattagcctc |
609 |
Q |
| |
|
|||||||||||||||||||| | | ||| || ||||||||||||||| ||| |||| |||| || | | ||| | ||| |||| |||||||| |||| |
|
|
| T |
3147757 |
aatcatgggtttgtcattcactccgcaaatgaccttgaatggccacaacatcatatcattttgaacaacagaatcaccaaacttcctaccaattaacctc |
3147856 |
T |
|
| Q |
610 |
tttgcatcta |
619 |
Q |
| |
|
|||||||||| |
|
|
| T |
3147857 |
tttgcatcta |
3147866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0734 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0734
Description:
Target: scaffold0734; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 774 - 828
Target Start/End: Original strand, 1908 - 1962
Alignment:
| Q |
774 |
taagtaatacaatcttgggattttggtcccttgtaaaaaacaataacaaatcagc |
828 |
Q |
| |
|
||||||| ||||||||| |||||||||||| | |||||||||||||||||||||| |
|
|
| T |
1908 |
taagtaacacaatcttgagattttggtcccctataaaaaacaataacaaatcagc |
1962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0734; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 591 - 645
Target Start/End: Original strand, 6714 - 6770
Alignment:
| Q |
591 |
tttccgaccaattagcctctttgcatctacaaaacaaa-ag-agagttgtgtacact |
645 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
6714 |
tttccaaccaattagcctctttgcatctacaaaacaaacagaagagttgtgtacact |
6770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 155
Target Start/End: Original strand, 12528558 - 12528634
Alignment:
| Q |
79 |
aactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctcctccagtggcctt |
155 |
Q |
| |
|
|||||||||||||| || ||||||||| |||||||||||| | ||| || |||||||||||||| |||||||||| |
|
|
| T |
12528558 |
aactctttcacaaagtgattcaccattcgattatcaaagtcctctcctccaaggtgagtgtctccggcagtggcctt |
12528634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 782 - 828
Target Start/End: Original strand, 18896459 - 18896505
Alignment:
| Q |
782 |
acaatcttgggattttggtcccttgtaaaaaacaataacaaatcagc |
828 |
Q |
| |
|
||||||||| |||||||||||| | ||||||||||||| |||||||| |
|
|
| T |
18896459 |
acaatcttgcgattttggtcccctataaaaaacaataataaatcagc |
18896505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 262 - 342
Target Start/End: Complemental strand, 9335822 - 9335742
Alignment:
| Q |
262 |
tcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct |
342 |
Q |
| |
|
||||||||||||||||| || || |||||||| ||||||| ||| || || ||||| ||||||||||||| ||| |||||| |
|
|
| T |
9335822 |
tcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaaggccagcaatagtaccagcatct |
9335742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 262 - 341
Target Start/End: Original strand, 30775489 - 30775568
Alignment:
| Q |
262 |
tcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc |
341 |
Q |
| |
|
||||| ||||||||||| || |||||||| |||||||| | ||||| ||||||||| || |||||||| ||||| ||||| |
|
|
| T |
30775489 |
tcaagtccatatgcaatagctgctgcagtgggctcattaattattctcataacattaagaccagcaatggcaccagcatc |
30775568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 261 - 342
Target Start/End: Original strand, 35132684 - 35132765
Alignment:
| Q |
261 |
gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct |
342 |
Q |
| |
|
||||||||||||||||| || || |||||||| ||||| | || || |||||||||| | |||||||||||||| |||||| |
|
|
| T |
35132684 |
gtcaaggccatatgcaaccgctgcggcagtaggttcattcattactctcataacattgggaccagcaatagcaccagcatct |
35132765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 261 - 342
Target Start/End: Original strand, 7542462 - 7542543
Alignment:
| Q |
261 |
gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct |
342 |
Q |
| |
|
||||||||||||||||| || || |||||||| ||||| | | | ||||||||||||||||||||| |||||||||||| |
|
|
| T |
7542462 |
gtcaaggccatatgcaacagctgcggcagtaggttcattcattgccctcataacattgaggccagcaatggcacccgcatct |
7542543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 261 - 341
Target Start/End: Complemental strand, 16661924 - 16661844
Alignment:
| Q |
261 |
gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc |
341 |
Q |
| |
|
|||||||||||||||||| || |||||||| || ||||||| ||| | || ||| || ||||||||||| ||||| ||||| |
|
|
| T |
16661924 |
gtcaaggccatatgcaatagctgctgcagtgggttcattgattatcctcacaacgttaaggccagcaatggcaccagcatc |
16661844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 261 - 342
Target Start/End: Complemental strand, 16657449 - 16657368
Alignment:
| Q |
261 |
gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct |
342 |
Q |
| |
|
|||||| ||||||||||| || || |||||||| ||||||| ||||| || ||||| |||||||| || ||||| |||||| |
|
|
| T |
16657449 |
gtcaagaccatatgcaatagctgcagcagtaggttcattgataattcgaatgacattaaggccagcgatggcaccagcatct |
16657368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 782 - 826
Target Start/End: Original strand, 5003527 - 5003571
Alignment:
| Q |
782 |
acaatcttgggattttggtcccttgtaaaaaacaataacaaatca |
826 |
Q |
| |
|
||||||||| ||||||| |||||| |||||||||||||||||||| |
|
|
| T |
5003527 |
acaatcttgcgattttgatcccttataaaaaacaataacaaatca |
5003571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 502 - 560
Target Start/End: Original strand, 15595516 - 15595571
Alignment:
| Q |
502 |
ttaacaacaatcatgggtttgtcattcaggtcaccaattactttgaatggccacaactt |
560 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||| || ||||||||||||||||| |
|
|
| T |
15595516 |
ttaacaataatcatgggtttgtcattca---caccaatgaccttgaatggccacaactt |
15595571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 261 - 341
Target Start/End: Complemental strand, 34466725 - 34466645
Alignment:
| Q |
261 |
gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc |
341 |
Q |
| |
|
|||||| ||||||||||| || || ||||| || ||||||| |||| ||| |||||| ||||||||||||| ||| ||||| |
|
|
| T |
34466725 |
gtcaagtccatatgcaatagctgcagcagtgggttcattgattatttgcaaaacattaaggccagcaatagtaccagcatc |
34466645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 783 - 828
Target Start/End: Original strand, 33096059 - 33096104
Alignment:
| Q |
783 |
caatcttgggattttggtcccttgtaaaaaacaataacaaatcagc |
828 |
Q |
| |
|
|||||||| ||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
33096059 |
caatcttgcaattttggtcccttataaaaaataataacaaatcagc |
33096104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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