View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21235_low_31 (Length: 281)
Name: NF21235_low_31
Description: NF21235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21235_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 14 - 226
Target Start/End: Original strand, 40192537 - 40192749
Alignment:
| Q |
14 |
aggaccaaactaaagtagagaagtacatgagatgttgcttttttatataagggacagtttaccggnnnnnnncaattttgtttcctataatatcctttat |
113 |
Q |
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| T |
40192537 |
aggaccaaactaaagtagagaagtacatgagatgttgcttttttatataagggacagtttaccggtttttttcaattttgtttcctataatatcctttat |
40192636 |
T |
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| Q |
114 |
agccgccttcttcattactacatttggaatgggtactttggtaattcctctactctaaaagaaaatatagttaagaggcttagagcattataatgggaaa |
213 |
Q |
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| T |
40192637 |
agccgccttcttcattactacatttggaatgggtactttggtaattcctctactctaaaagaaaatatagttaagaggcttagagcattataatgggaaa |
40192736 |
T |
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| Q |
214 |
ataaaaataatat |
226 |
Q |
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||||||||||||| |
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| T |
40192737 |
ataaaaataatat |
40192749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 218 - 265
Target Start/End: Original strand, 40193466 - 40193513
Alignment:
| Q |
218 |
aaataatatttgctcaaaaatgatttatattgagacacatgaaatatt |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40193466 |
aaataatatttgctcaaaaatgatttatattgagacacatgaaatatt |
40193513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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