View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21235_low_32 (Length: 280)
Name: NF21235_low_32
Description: NF21235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21235_low_32 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 89 - 280
Target Start/End: Complemental strand, 4708535 - 4708343
Alignment:
| Q |
89 |
attcaaactctaaaatttttagagagtggatcaaaattaaactgctcaggagttgttattgtgatgatctgaggcatggagtgacattgtaaaa-tggtg |
187 |
Q |
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| T |
4708535 |
attcaaactctaaaatttttagagagtggatcaaaattaaactgctcaggagttgttattgtgatgatctgaggcatggagtgacattgtaaaattggtg |
4708436 |
T |
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| Q |
188 |
tgctcaaaagtcacgctttacattggatgtttatgtcatgcgtttataagaaaattgtagttgtcgtctttgatatgaaaaccttaatggtat |
280 |
Q |
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| T |
4708435 |
tgctcaaaagtcacgctttacattggatgtttatgtcatgtgtttataagaaaattgttgttgtcgtctttgatatgaaaaccttaatggtat |
4708343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 241
Target Start/End: Complemental strand, 4746168 - 4746091
Alignment:
| Q |
165 |
tggagtgacattgtaaaat-ggtgtgctcaaaagtcacgctttacattggatgtttatgtcatgcgtttataagaaaa |
241 |
Q |
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| T |
4746168 |
tggagtgacattgtgaagttggtgtgctctaaagtcagactttaaattggatgttcatgtcatatgtttataagaaaa |
4746091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 88
Target Start/End: Complemental strand, 4708616 - 4708582
Alignment:
| Q |
54 |
acaagttcatgagtagatcttgcattttgatttgc |
88 |
Q |
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| T |
4708616 |
acaagttcacgagtagatcttgcattttgatttgc |
4708582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 161
Target Start/End: Complemental strand, 1388871 - 1388816
Alignment:
| Q |
106 |
tttagagagtggatcaaaattaaactgctcaggagttgttattgtgatgatctgag |
161 |
Q |
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| T |
1388871 |
tttagagagtggatcaaaattaaactacttaagaattattattgtgatgacctgag |
1388816 |
T |
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