View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21235_low_38 (Length: 233)
Name: NF21235_low_38
Description: NF21235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21235_low_38 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 449115 - 448875
Alignment:
| Q |
1 |
agatataagagatattgttatatatagaa--------tagctaccttgctttgatcacatatattccagaataattcataaaaaagttagttcctaatta |
92 |
Q |
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| T |
449115 |
agatataagagatattgttatatatagaaatagaatatagctagcttgctttgatcacatatattccagaataattgataaaaaagttagttcctaatta |
449016 |
T |
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| Q |
93 |
tgcattctatcaaatcaaatctctttcataaatctctagtaacgaaactgagaaaatatacatttcatgcaaagttacatatataactaaaaaatggtat |
192 |
Q |
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| T |
449015 |
tgcattctatcaattcaaatctctttcataaatctctagtaacgagactgagaaaatatacatttcatgcaaacttacatatataactaaaaaatggtat |
448916 |
T |
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| Q |
193 |
cataaaatgatttgattgaatgtatatgaaaaatagtttta |
233 |
Q |
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| T |
448915 |
cataaaatgatttgattgaatgtatatcaaaaatagtttta |
448875 |
T |
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