View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21235_low_40 (Length: 218)
Name: NF21235_low_40
Description: NF21235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21235_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 17 - 203
Target Start/End: Original strand, 32394805 - 32394991
Alignment:
| Q |
17 |
cacgtccctctcttgaccggatcaaatccggcggcggttcctggttcaatccccggtgccgtattcaatgtcgccaccagcataattggctccggaatca |
116 |
Q |
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| T |
32394805 |
cacgttcctctcttgaccggatcaaatccggcggcggttcctggttcaatccccggtgccgtattcaatgtcgccaccagcataattggctccggaatca |
32394904 |
T |
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| Q |
117 |
tgtcaattccggcgattctcaaagttctcggtgtgcttccttccttcgccttgattcttattgttgccgtgctcgccgaagtctctg |
203 |
Q |
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| T |
32394905 |
tgtcaattccggcgattctcaaagttctcggtgtgcttccttccttcgccttgattcttattgttgccgtgctcgccgaagtttctg |
32394991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 21 - 144
Target Start/End: Original strand, 32392750 - 32392873
Alignment:
| Q |
21 |
tccctctcttgaccggatcaaatccggcggcggttcctggttcaatccccggtgccgtattcaatgtcgccaccagcataattggctccggaatcatgtc |
120 |
Q |
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| T |
32392750 |
tccctctattgaccggatcaaaattggcgccggcgcccggtaccatccccggcgccgtgctcaatgtcgccacaagcattattggttctggaatcatgtc |
32392849 |
T |
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| Q |
121 |
aattccggcgattctcaaagttct |
144 |
Q |
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| T |
32392850 |
cattccggcaattctaaaagttct |
32392873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 74 - 177
Target Start/End: Original strand, 1971494 - 1971597
Alignment:
| Q |
74 |
gccgtattcaatgtcgccaccagcataattggctccggaatcatgtcaattccggcgattctcaaagttctcggtgtgcttccttccttcgccttgattc |
173 |
Q |
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| T |
1971494 |
gccgtattcaatgtcgcccccagcataatcggctccggaatcatttaaattccggcgattctcaaagttctcggcgtgcttccttctttcgccttgattc |
1971593 |
T |
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| Q |
174 |
ttat |
177 |
Q |
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|||| |
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| T |
1971594 |
ttat |
1971597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 177
Target Start/End: Original strand, 19962540 - 19962578
Alignment:
| Q |
139 |
agttctcggtgtgcttccttccttcgccttgattcttat |
177 |
Q |
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| T |
19962540 |
agttctcggcgtgcttccttctttcgccttgattcttat |
19962578 |
T |
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