View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21235_low_41 (Length: 215)
Name: NF21235_low_41
Description: NF21235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21235_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 40314743 - 40314637
Alignment:
| Q |
20 |
caaatatgccaagcttcaagaaggaatgggctcctatagcttgaccatgtcccaagcctcaagagttaatctctgctcaaacacaccgagtactcacatg |
119 |
Q |
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| T |
40314743 |
caaatatgccaagcttcaagaaggaatgggctcctatagcttgagcatgtcccaagcctcaagagttaatctctgctcaaacacaccgagtactcacatg |
40314644 |
T |
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| Q |
120 |
ttgtata |
126 |
Q |
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||||||| |
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| T |
40314643 |
ttgtata |
40314637 |
T |
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Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 37895751 - 37895845
Alignment:
| Q |
21 |
aaatatgccaagcttcaagaaggaatgggctcctatagcttgaccatgtcccaagcctcaagagttaatctctgctcaaacacaccgagtactca |
115 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
37895751 |
aaatatgccaagcttcaagaaggaatgggctcctgtagcttgagcatgtcccaagcctcaagagttaatctttgctcaaacacaccgagtactca |
37895845 |
T |
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