View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21235_low_45 (Length: 204)

Name: NF21235_low_45
Description: NF21235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21235_low_45
NF21235_low_45
[»] chr8 (6 HSPs)
chr8 (18-85)||(3827835-3827902)
chr8 (19-85)||(3823630-3823692)
chr8 (18-85)||(3867026-3867089)
chr8 (149-190)||(3827730-3827771)
chr8 (149-190)||(3823525-3823566)
chr8 (149-190)||(3865294-3865335)


Alignment Details
Target: chr8 (Bit Score: 68; Significance: 1e-30; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 3827902 - 3827835
Alignment:
Q  18 ctttctgttgttcaatctttaaagcattaagtttatatatggataattatatatcattcttttaactc 85  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3827902 ctttctgttgttcaatctttaaagcattaagtttatatatggataattatatatcattcttttaactc 3827835  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 3823692 - 3823630
Alignment:
Q  19 tttctgttgttcaatctttaaagcattaagtttatatatggataattatatatcattcttttaactc 85  Q
    |||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||    
T  3823692 tttctgttgttcaatctttaaagcattaagt----atatggataattatatatcattcttttaactc 3823630  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 3867089 - 3867026
Alignment:
Q  18 ctttctgttgttcaatctttaaagcattaagtttatatatggataattatatatcattcttttaactc 85  Q
    ||||||| |||||||||||||||||| |||||    ||||||||||||||||||||||||||||||||    
T  3867089 ctttctgctgttcaatctttaaagcactaagt----atatggataattatatatcattcttttaactc 3867026  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 149 - 190
Target Start/End: Complemental strand, 3827771 - 3827730
Alignment:
Q  149 gaaattaaggtatgcatagatagaataagatgttgatctctg 190  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  3827771 gaaattaaggtatgcatagatagaataagatgttgatctctg 3827730  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 190
Target Start/End: Complemental strand, 3823566 - 3823525
Alignment:
Q  149 gaaattaaggtatgcatagatagaataagatgttgatctctg 190  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  3823566 gaaattaaggtatgcatagatagaataagatattgatctctg 3823525  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 190
Target Start/End: Complemental strand, 3865335 - 3865294
Alignment:
Q  149 gaaattaaggtatgcatagatagaataagatgttgatctctg 190  Q
    |||||||||||||||||||||| |||||||| ||||||||||    
T  3865335 gaaattaaggtatgcatagataaaataagatattgatctctg 3865294  T

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