View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21235_low_8 (Length: 657)
Name: NF21235_low_8
Description: NF21235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21235_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 19 - 604
Target Start/End: Complemental strand, 40440847 - 40440261
Alignment:
| Q |
19 |
gattggccttctggtcagctaatctgttgcatagtaagttcgattggatataatgaataaaggttttgagggaatatgtgtggtcacatgtaagtttttg |
118 |
Q |
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| T |
40440847 |
gattggccttctggtcagctaatctgttgcatagtaagttcgattggatataatgaataaaggttttgagggaataggtgtggtcacatgtaagtttttg |
40440748 |
T |
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| Q |
119 |
gttgttgtggtattggtggggttaggtttagtgtttgaggatggaggtttgaaaggtgaacagggagggtgatttaagggtttaaggggtgcatgtttgg |
218 |
Q |
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| T |
40440747 |
gttgtggtggtattggtggggttaggtttagtgtttgaggatggaggtttgaaaggtgaatagggagggtgattgaagggtttaaggggtgcatgtttgg |
40440648 |
T |
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| Q |
219 |
atgatttatagggacaagctaagcttgcagcttgttgtattgaagtggggttgaacatgcgcacatgcatatgtgtactatgttccaaaccaacaag-aa |
317 |
Q |
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| T |
40440647 |
atgatttatagggacaagctaagcttgcagcttgttgtatcgaagtgtggctgaacatacgcacatgcatatgtgtgctatgttccaaaccaacaagaaa |
40440548 |
T |
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| Q |
318 |
aatgataagggaatgttaagaagtattgacccttgggttaaaacgagttcgaatttttcagcgtactcgtgcatcttcccaccttgttg--gacgtgaat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||| |
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| T |
40440547 |
aatgataagggaatgttaagaagtattgacccttgggttaaaacgagttcgaatttttcatcgtactcttgcatcttcccaccttgttgttgacgtgaat |
40440448 |
T |
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| Q |
416 |
caaagtagccagggggtcttcatcagcgtacttttgccatggaggagtatttgtatcttgccagcatgtagtttaagtgtcattgaagggcaagaccatc |
515 |
Q |
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||||||||||| ||||||||||||||| |||| |||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40440447 |
caaagtagcca-ggggtcttcatcagcatactcttgccatggaggagta-tcgtatcttgcccgcatgtagtttaagtgtcattgaagggcaagaccatc |
40440350 |
T |
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| Q |
516 |
aaagtgaatcgatgctaggcaaaccctaggttcttgagggatctcgttcaaggggaagaattgctcacatttgtataaccagacacacc |
604 |
Q |
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|||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
40440349 |
aaagtgaatcgatgctaggcgaaccctaggttattgagggatctcgtccaaggggaagaattgctcacatttgtataaccagacacacc |
40440261 |
T |
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