View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21235_low_9 (Length: 603)
Name: NF21235_low_9
Description: NF21235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21235_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 17 - 532
Target Start/End: Original strand, 33507334 - 33507848
Alignment:
| Q |
17 |
aaacaaaaacatatactaaattcatgcataccatcaagtgaaattaaactaaaa-aatatcaccataaacattgattagttcattagtgtatggaaaatc |
115 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33507334 |
aaacaaaaacatatactaaatgcatgcataccatcaagtgaattaaaactaaaaaaatatcaccataaacattgattagttcattagtgtatggaaaatc |
33507433 |
T |
|
| Q |
116 |
caagacaacgccctccaattaattttggctttcaattcaacttagaaagtgatactcgctcgactcactcaaataaaaactaaaccttcaaattcaattc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33507434 |
caagacaacgccctccaattaattttggctttcaattcaacttagaaagtgatactcgctcgactcactcaaataaaaactaaaccttcaaattcaattc |
33507533 |
T |
|
| Q |
216 |
caaacactaaagttgcattatatatagcaccttcggattgaaggcctgtttaatgtccaagatcagaatatacctatgttgggttgtgaagcattgacag |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
33507534 |
caaacactaaagttgcattatatatagcaccttcggattgaaggcctgtttagtgtccaaggtcagaatatacctatgttgggttgtgaaacattgacac |
33507633 |
T |
|
| Q |
316 |
agacatttaacacaacactcacactgagtgctgtgtagatgtttgtgtcaatgtcaatgcacacaacccaacatagtaaaaaaca--aatattgcataca |
413 |
Q |
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||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33507634 |
cgacatttaacacaacactcacaccgagtgttgtgtaggtgtttgtgtcaatgtcaatgcacacaacccaacatagtaaaaaacaacaatattgcataca |
33507733 |
T |
|
| Q |
414 |
tagtaaagttagaagcatttgtcgtacacttgaaactaaaactaactcccacatttccggacattctttaccttcttgtgttctaatgaatgaagtttca |
513 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| || |
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| T |
33507734 |
tagtaaagttagaagcatttgtc-tacacttgaaactaaaactaactcccacatttccggacattccttac---cttgtgttctaatgaatgaagttcca |
33507829 |
T |
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| Q |
514 |
tttcggggaaaaccaataa |
532 |
Q |
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||| ||||||||||||||| |
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| T |
33507830 |
tttaggggaaaaccaataa |
33507848 |
T |
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