View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21236_high_6 (Length: 396)
Name: NF21236_high_6
Description: NF21236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21236_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 19 - 383
Target Start/End: Original strand, 47391332 - 47391694
Alignment:
| Q |
19 |
ctcacagctccatttgcacggtccacttgaccactagcttttctcaaagcattctccatctccgagagtctcttcatagttgtgtcctcaagtgcctgtt |
118 |
Q |
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| T |
47391332 |
ctcacagctccatttgcacggtccacttgaccactagcctttctcaaagcattctccatctccgagagtctcttcatagttgtgtcctcaagtgcctgtt |
47391431 |
T |
|
| Q |
119 |
tccctttcttcaatttctgggtctcctctctatccatccgtaatgttttgagctcagtcaaatcactgcttagcttctttgcggcctgcaatgctttttg |
218 |
Q |
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|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
47391432 |
tccctttcttcaatttctgg-tctcctctctatccatccataatgttttgagctcagtcaaatcactgcttagcttctttgcggcctgcaatgctttctg |
47391530 |
T |
|
| Q |
219 |
atatgcccaccccattctttccgctgcttggcctgtttttccaaatcctttatctgatgaaatatactcactatcacctcatccttctgatcctcagcca |
318 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47391531 |
atatgcccaccc-attctttccgctgcttggcctgtttttccaaatcctttatctgatgaaatatactcactatcacctcatccttctgatcctcagcca |
47391629 |
T |
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| Q |
319 |
caaactccaaattttcatcaagattcaagtcacgaaatttactcagctccgagttcacagcccct |
383 |
Q |
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| T |
47391630 |
caaactccaaattttcatcaagattcaagtcacgaaatttactcagctccgagttcacagcccct |
47391694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 19 - 380
Target Start/End: Complemental strand, 40624798 - 40624442
Alignment:
| Q |
19 |
ctcacagctccatttgcacggtccacttgaccactagcttttctcaaagcattctccatctccgagagtctcttcatagttgtgtcctcaagtgcctgtt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
40624798 |
ctcacagctccatttgcacggtccacttgaccactagcttttctcaaagcattctccatctccgagagtctcttcatggttgtatcctcaagtgcctgtt |
40624699 |
T |
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| Q |
119 |
tccctttcttcaatttctgggtctcctctctatccatccgtaatgttttgagctcagtcaaatcactgcttagcttctttgcggcctgcaatgctttttg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| || |
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| T |
40624698 |
tccctttcttcaatttctgggtctcctctctatccatccgtaatgttttgagctcggtcaaatcactgcttagcttcttcgcggcctgcaatgctttctg |
40624599 |
T |
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| Q |
219 |
atatgcccaccccattctttccgctgcttggcctgtttttccaaatcctttatctgatgaaatatactcactatcacctcatccttctgatcctcagcca |
318 |
Q |
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||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
40624598 |
ata-----agcccattctttccgctccttggcctgtttttccaaatcctttatctgatgaaatatactcactatcacttcatccttctgatcctcagcca |
40624504 |
T |
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| Q |
319 |
caaactccaaattttcatcaagattcaagtcacgaaatttactcagctccgagttcacagcc |
380 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
40624503 |
caaactccaaattttcatcaagattcaagtcacgaaatttactcagcaccgagttcacagcc |
40624442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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