View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21236_low_1 (Length: 774)
Name: NF21236_low_1
Description: NF21236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21236_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 695; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 695; E-Value: 0
Query Start/End: Original strand, 17 - 759
Target Start/End: Complemental strand, 46631469 - 46630720
Alignment:
| Q |
17 |
acattcacaaaccataagtatttcagtccttgaaattgtaaagtagggcaatttacaaatctgaaggactaaattggccgaccctt-------ggcgata |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
46631469 |
acattcacaaaccataagtatttcagtccttgaaattgtaaagtagggcaatttacaaatttgaaggactaaattggccgacccttaaattgtggcgata |
46631370 |
T |
|
| Q |
110 |
aatttggaaaaacaacgaaattatctgacattgttcactttaagggactaaaatactaattcgcaaatttgaaagattaaattgaccgacccttaaaatt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46631369 |
aatttggaaaaacaacgaaattatctgacattgttcactttaagggactaaaatactaattcgcaaatttgaaagattaaattgaccgacccttaaaatt |
46631270 |
T |
|
| Q |
210 |
tcaaggactaggaaaactaacttcataccaagtgagatcgaaagacacattgaattttaacagcagcagcatcttcaatacttttagatgtttcatttga |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46631269 |
tcaaggactaggaaaactaacttcataccaagtgagatcgaaagacacattgaattttaacagcagcagcatcttcaatacttttagatgtttcatttga |
46631170 |
T |
|
| Q |
310 |
accagaagttaaccggatcacagcagctgcagcttgtgcagctgccactgctgcatcagctgccgcggctgtcgcagcagccacagcaatggcatgattc |
409 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
46631169 |
accagaagttaaccggatcacagcagctgcagcttgtgcagctgccactgctgcatcagctgccgcggctgtagcagcagccacagcaatggcatgattc |
46631070 |
T |
|
| Q |
410 |
ctttgctcattctgaatatcaatgacagtactttgcactgtcattgaagcagtaatttcagaattattcaattccttggaagctgttggtgtagctgttg |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46631069 |
ctttgctcattctgaatatcaatgacagtactttgcactgtcattgaagcagtaatttcagaattattcaattccttggaagctgttggtgtagctgttg |
46630970 |
T |
|
| Q |
510 |
ctgatgatcttctaaaactccatctcttcttctcctttgagggtgttgttgaaacaggagtagttggattttctgttccatttgaaaaattctggtttgt |
609 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46630969 |
ctgatgatcttctaaaactccatctcttcttctcctttgagggtgttgttgaaacaggagtagttggattttctgttccatttgaaaaattctggtttgt |
46630870 |
T |
|
| Q |
610 |
gttacatttttccttctctttttctttgtccttcttccctgtcaagaaatttttgagccatttaccnnnnnnncccatctcttttctctcaagtgcctag |
709 |
Q |
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| T |
46630869 |
gttacatttttccttctctttttctttgtccttcttccctgtcaagaaatttttgagccatttacctttttttcccatctcttttctctcaagtgcctag |
46630770 |
T |
|
| Q |
710 |
taaactaacatggattgttgcaactacctataagaaagttgcaaaatgat |
759 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46630769 |
taaactaacatggattgttgcaactacctataagaaagttgcaaaatgat |
46630720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 509 - 592
Target Start/End: Complemental strand, 15505201 - 15505121
Alignment:
| Q |
509 |
gctgatgatcttctaaaactccatctcttcttctcctttgagggtgttgttgaaacaggagtagttggattttctgttccattt |
592 |
Q |
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|||||||||||||| ||||||||||| | ||||||||| ||||||||||| | |||||||| |||||||| ||||||||| |
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| T |
15505201 |
gctgatgatcttctgaaactccatcttcttttctccttt---ggtgttgttgagattggagtagtaggattttcagttccattt |
15505121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 8e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 124 - 219
Target Start/End: Original strand, 35138536 - 35138631
Alignment:
| Q |
124 |
acgaaattatctgacattgttcactttaagggactaaaatactaattcgcaaatttgaaagattaaattgaccgacccttaaaatttcaaggacta |
219 |
Q |
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|||||||| || |||||||||| |||||||||||||| | ||| ||||||||||||||| | |||||||||||| |||||||||||||||||||| |
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| T |
35138536 |
acgaaattgactaacattgttcaatttaagggactaaattgctatttcgcaaatttgaaatactaaattgaccgatccttaaaatttcaaggacta |
35138631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 209
Target Start/End: Original strand, 32811090 - 32811192
Alignment:
| Q |
108 |
taaatttggaaaaacaacgaaattatctgacattgttcactttaagggactaaaatactaattcgcaaatttgaaaga-ttaaattgaccgacccttaaa |
206 |
Q |
| |
|
|||||||||||||| ||| ||||| ||||| ||||||| |||||||||||||| | ||| || |||||||||| || | ||||| ||||||||||| | |
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| T |
32811090 |
taaatttggaaaaataacataattaactgacgttgttcaatttaagggactaaatttctattttgcaaatttgagggactaaaatttaccgacccttata |
32811189 |
T |
|
| Q |
207 |
att |
209 |
Q |
| |
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||| |
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|
| T |
32811190 |
att |
32811192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 135 - 219
Target Start/End: Complemental strand, 42510790 - 42510706
Alignment:
| Q |
135 |
tgacattgttcactttaagggactaaaatactaattcgcaaatttgaaagattaaattgaccgacccttaaaatttcaaggacta |
219 |
Q |
| |
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||||||| |||| |||||||||||||| | ||| |||||| |||| || || |||||||||||||| ||| |||||||||||||| |
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| T |
42510790 |
tgacatttttcaatttaagggactaaactcctatttcgcagatttcaaggactaaattgaccgacctttacaatttcaaggacta |
42510706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 219
Target Start/End: Complemental strand, 11567623 - 11567578
Alignment:
| Q |
174 |
aaatttgaaagattaaattgaccgacccttaaaatttcaaggacta |
219 |
Q |
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|||||||| || |||||||||||||||||| |||||||||||||| |
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| T |
11567623 |
aaatttgagggactaaattgaccgacccttacaatttcaaggacta |
11567578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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