View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21236_low_10 (Length: 321)

Name: NF21236_low_10
Description: NF21236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21236_low_10
NF21236_low_10
[»] chr1 (6 HSPs)
chr1 (10-303)||(19386367-19386660)
chr1 (216-269)||(34725095-34725148)
chr1 (217-269)||(19414545-19414597)
chr1 (218-269)||(35253186-35253237)
chr1 (218-269)||(38478281-38478332)
chr1 (218-269)||(50606511-50606562)
[»] scaffold0223 (1 HSPs)
scaffold0223 (219-269)||(11214-11264)
[»] chr3 (10 HSPs)
chr3 (216-269)||(30452902-30452955)
chr3 (219-271)||(31592952-31593004)
chr3 (218-269)||(1217195-1217246)
chr3 (218-269)||(24851300-24851351)
chr3 (218-269)||(15797327-15797378)
chr3 (218-269)||(34771363-34771414)
chr3 (216-269)||(13628787-13628840)
chr3 (220-269)||(22122918-22122967)
chr3 (218-267)||(24577944-24577993)
chr3 (217-269)||(25517168-25517220)
[»] chr2 (5 HSPs)
chr2 (216-269)||(21779258-21779311)
chr2 (218-269)||(14444813-14444864)
chr2 (235-269)||(4794887-4794921)
chr2 (216-269)||(34080186-34080239)
chr2 (217-269)||(9671264-9671316)
[»] scaffold0015 (1 HSPs)
scaffold0015 (217-269)||(48632-48684)
[»] chr7 (9 HSPs)
chr7 (217-269)||(21172007-21172059)
chr7 (218-269)||(32758344-32758395)
chr7 (218-269)||(42391099-42391150)
chr7 (219-269)||(48735122-48735172)
chr7 (216-269)||(31591106-31591159)
chr7 (219-269)||(10693073-10693123)
chr7 (219-269)||(45018923-45018973)
chr7 (220-269)||(11741878-11741927)
chr7 (220-257)||(42476968-42477005)
[»] chr6 (4 HSPs)
chr6 (217-269)||(1354755-1354807)
chr6 (218-269)||(1347047-1347098)
chr6 (218-269)||(25557808-25557859)
chr6 (218-269)||(26097243-26097294)
[»] chr5 (8 HSPs)
chr5 (217-269)||(32703507-32703559)
chr5 (218-269)||(16028623-16028674)
chr5 (220-263)||(19438757-19438800)
chr5 (218-269)||(35710396-35710447)
chr5 (219-269)||(30877564-30877614)
chr5 (219-269)||(34154814-34154864)
chr5 (217-269)||(16957399-16957451)
chr5 (217-269)||(38879668-38879720)
[»] scaffold0168 (1 HSPs)
scaffold0168 (218-269)||(30662-30713)
[»] chr8 (5 HSPs)
chr8 (218-269)||(30454096-30454147)
chr8 (216-269)||(19729425-19729478)
chr8 (218-269)||(12670249-12670300)
chr8 (218-269)||(26102602-26102653)
chr8 (216-269)||(39460991-39461044)
[»] chr4 (7 HSPs)
chr4 (218-269)||(11054147-11054198)
chr4 (218-269)||(38786694-38786745)
chr4 (219-269)||(20225067-20225117)
chr4 (221-269)||(29207900-29207948)
chr4 (218-269)||(23501874-23501925)
chr4 (218-269)||(32484318-32484369)
chr4 (216-269)||(14983919-14983972)
[»] scaffold0180 (1 HSPs)
scaffold0180 (218-269)||(24132-24183)
[»] scaffold0018 (1 HSPs)
scaffold0018 (219-269)||(72867-72917)


Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 10 - 303
Target Start/End: Original strand, 19386367 - 19386660
Alignment:
Q  10 attattctaagggagtcaagaaatcccaaatctcaatgcattttgttaatttcaccaagtccaaagccttgaggattctttgtcctccaacaggagtatt 109  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19386367 attattctaagggagtcaagaaatcccaaatctcaaagcattttgttaatttcaccaagtccaaagccttgaggattctttgtcctccaacaggagtatt 19386466  T
Q  110 gtatcaaaatagcagcagagttgttgttactcagttcatatgttgctagagatggattgggaggttagagtttgtcactcttactaggagactaataatt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19386467 gtatcaaaatagcagcagagttgttgttactcagttcatatgttgctagagatggattgggaggttagagtttgtcactcttactaggagactaataatt 19386566  T
Q  210 gtgcagataaaagggcaacctggttcactagagctcccgtatatgcaggatccgggaaggagactaataattgtgcggatactttggctaatat 303  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  19386567 gtgcagataaaagagcaacctggttcactagagctcccgcatatgcagggtccgggaaggagactaataattgtgcggatactttggctaatat 19386660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 34725095 - 34725148
Alignment:
Q  216 ataaaagggcaacctggttcactagagctcccgtatatgcaggatccgggaagg 269  Q
    |||||||||||||| ||| |||||||||||||| ||||||||| ||||||||||    
T  34725095 ataaaagggcaacccggtgcactagagctcccgcatatgcagggtccgggaagg 34725148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 19414597 - 19414545
Alignment:
Q  217 taaaagggcaacctggttcactagagctcccgtatatgcaggatccgggaagg 269  Q
    ||||||||||||| ||| |||||||||||||| ||||||||| | ||||||||    
T  19414597 taaaagggcaacccggtgcactagagctcccgcatatgcagggtacgggaagg 19414545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 269
Target Start/End: Original strand, 35253186 - 35253237
Alignment:
Q  218 aaaagggcaacctggttcactagagctcccgtatatgcaggatccgggaagg 269  Q
    |||||||||| | ||| |||||||||||||| ||||||||| ||||||||||    
T  35253186 aaaagggcaatccggtgcactagagctcccgcatatgcagggtccgggaagg 35253237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 269
Target Start/End: Original strand, 38478281 - 38478332
Alignment:
Q  218 aaaagggcaacctggttcactagagctcccgtatatgcaggatccgggaagg 269  Q
    |||||||||||| ||| |||||||||||||| ||||||||| |||| |||||    
T  38478281 aaaagggcaacccggtgcactagagctcccgcatatgcagggtccgagaagg 38478332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 269
Target Start/End: Complemental strand, 50606562 - 50606511
Alignment:
Q  218 aaaagggcaacctggttcactagagctcccgtatatgcaggatccgggaagg 269  Q
    |||||||||||| ||| ||||| |||||||| ||||||||| ||||||||||    
T  50606562 aaaagggcaacccggtgcactaaagctcccgcatatgcagggtccgggaagg 50606511  T

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Target: scaffold0223 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 11264 - 11214
Alignment:
Q  219 aaagggcaacctggttcactagagctcccgtatatgcaggatccgggaagg 269  Q
    ||||||||||||||| |||||||||||||| ||||||||| ||||||||||    
T  11264 aaagggcaacctggtgcactagagctcccgcatatgcagggtccgggaagg 11214  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 30452955 - 30452902
Alignment:
Q  216 ataaaagggcaacctggttcactagagctcccgtatatgcaggatccgggaagg 269  Q
    |||||||||||||| ||| |||||||||||||| ||||||||| ||||||||||    
T  30452955 ataaaagggcaacccggtgcactagagctcccgcatatgcagggtccgggaagg 30452902  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 31593004 - 31592952
Alignment:
Q  219 aaagggcaacctggttcactagagctcccgtatatgcaggatccgggaaggag 271  Q
    ||||||||||| ||| |||||||||||||| ||||||||| ||||||||||||    
T  31593004 aaagggcaacccggtgcactagagctcccgcatatgcagggtccgggaaggag 31592952  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 269
Target Start/End: Complemental strand, 1217246 - 1217195
Alignment:
Q  218 aaaagggcaacctggttcactagagctcccgtatatgcaggatccgggaagg 269  Q
    |||||||||||| ||| |||||||||||||| ||||||||| ||||||||||    
T  1217246 aaaagggcaacccggtgcactagagctcccgcatatgcagggtccgggaagg 1217195  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 269
Target Start/End: Original strand, 24851300 - 24851351
Alignment:
Q  218 aaaagggcaacctggttcactagagctcccgtatatgcaggatccgggaagg 269  Q
    |||||||||||| ||| ||||| |||||||| ||||||||||||||||||||    
T  24851300 aaaagggcaacccggtgcactaaagctcccgcatatgcaggatccgggaagg 24851351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 269
Target Start/End: Complemental strand, 15797378 - 15797327
Alignment:
Q  218 aaaagggcaacctggttcactagagctcccgtatatgcaggatccgggaagg 269  Q
    |||||||||||| ||| |||||||||||||  ||||||||| ||||||||||    
T  15797378 aaaagggcaacccggtgcactagagctcccacatatgcagggtccgggaagg 15797327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 269
Target Start/End: Original strand, 34771363 - 34771414
Alignment:
Q  218 aaaagggcaacctggttcactagagctcccgtatatgcaggatccgggaagg 269  Q
    ||||||||| || ||| |||||||||||||| ||||||||| ||||||||||    
T  34771363 aaaagggcagcccggtgcactagagctcccgcatatgcagggtccgggaagg 34771414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 13628787 - 13628840
Alignment:
Q  216 ataaaagggcaacctggttcactagagctcccgtatatgcaggatccgggaagg 269  Q
    |||||||||||||| ||| ||||| |||||||| ||| ||||| ||||||||||    
T  13628787 ataaaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaagg 13628840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 269
Target Start/End: Original strand, 22122918 - 22122967
Alignment:
Q  220 aagggcaacctggttcactagagctcccgtatatgcaggatccgggaagg 269  Q
    |||||||||| ||| ||||||||||| || ||||||||| ||||||||||    
T  22122918 aagggcaacccggtgcactagagctctcgcatatgcagggtccgggaagg 22122967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 24577993 - 24577944
Alignment:
Q  218 aaaagggcaacctggttcactagagctcccgtatatgcaggatccgggaa 267  Q
    |||||||||| | ||| |||||||||||||||||||||||| || |||||    
T  24577993 aaaagggcaatccggtgcactagagctcccgtatatgcagggtctgggaa 24577944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 25517168 - 25517220
Alignment:
Q  217 taaaagggcaacctggttcactagagctcccgtatatgcaggatccgggaagg 269  Q
    ||||||||||||| ||| ||||| |||||| | ||| ||||||||||||||||    
T  25517168 taaaagggcaacccggtgcactaaagctccagcatacgcaggatccgggaagg 25517220  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 21779258 - 21779311
Alignment:
Q  216 ataaaagggcaacctggttcactagagctcccgtatatgcaggatccgggaagg 269  Q
    |||||||||||||| ||| |||||||||||||| ||||||||| ||||||||||    
T  21779258 ataaaagggcaacccggtgcactagagctcccgcatatgcagggtccgggaagg 21779311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 269
Target Start/End: Complemental strand, 14444864 - 14444813
Alignment:
Q  218 aaaagggcaacctggttcactagagctcccgtatatgcaggatccgggaagg 269  Q
    |||||||||||||||| ||||| |||||||| ||| ||||| ||||||||||    
T  14444864 aaaagggcaacctggtgcactaaagctcccgcatacgcagggtccgggaagg 14444813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 269
Target Start/End: Complemental strand, 4794921 - 4794887
Alignment:
Q  235 cactagagctcccgtatatgcaggatccgggaagg 269  Q
    |||||||||||||| ||||||||||||||||||||    
T  4794921 cactagagctcccgcatatgcaggatccgggaagg 4794887  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 34080239 - 34080186
Alignment:
Q  216 ataaaagggcaacctggttcactagagctcccgtatatgcaggatccgggaagg 269  Q
    |||||||||||||| ||| ||||| | |||||| ||||||||| ||||||||||    
T  34080239 ataaaagggcaacccggtgcactaaaactcccgcatatgcagggtccgggaagg 34080186  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 9671316 - 9671264
Alignment:
Q  217 taaaagggcaacctggttcactagagctcccgtatatgcaggatccgggaagg 269  Q
    ||||||||||||| ||| ||||| |||||||| ||| ||||| ||||||||||    
T  9671316 taaaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaagg 9671264  T

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Target: scaffold0015 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 48632 - 48684
Alignment:
Q  217 taaaagggcaacctggttcactagagctcccgtatatgcaggatccgggaagg 269  Q
    ||||||||||||| ||| |||||||||||||| ||||||||| ||||||||||    
T  48632 taaaagggcaacccggtgcactagagctcccgcatatgcagggtccgggaagg 48684  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 21172007 - 21172059
Alignment:
Q  217 taaaagggcaacctggttcactagagctcccgtatatgcaggatccgggaagg 269  Q
    ||||||||||||| ||| |||||||||||||| ||||||||| ||||||||||    
T  21172007 taaaagggcaacccggtgcactagagctcccgcatatgcagggtccgggaagg 21172059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 269
Target Start/End: Complemental strand, 32758395 - 32758344
Alignment:
Q  218 aaaagggcaacctggttcactagagctcccgtatatgcaggatccgggaagg 269  Q
    |||||||||||| ||| |||||||||||||| ||||||||| ||||||||||    
T  32758395 aaaagggcaacccggtgcactagagctcccgcatatgcagggtccgggaagg 32758344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 269
Target Start/End: Original strand, 42391099 - 42391150
Alignment:
Q  218 aaaagggcaacctggttcactagagctcccgtatatgcaggatccgggaagg 269  Q
    |||||||||||| ||| |||||||||||||| ||||||||| ||||||||||    
T  42391099 aaaagggcaacccggtgcactagagctcccgcatatgcagggtccgggaagg 42391150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 48735122 - 48735172
Alignment:
Q  219 aaagggcaacctggttcactagagctcccgtatatgcaggatccgggaagg 269  Q
    ||||||||||| ||| |||||||||||||| ||||||||| ||||||||||    
T  48735122 aaagggcaacccggtgcactagagctcccgcatatgcagggtccgggaagg 48735172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 31591106 - 31591159
Alignment:
Q  216 ataaaagggcaacctggttcactagagctcccgtatatgcaggatccgggaagg 269  Q
    |||||||||||||| ||| |||||||||||||| ||||||| | ||||||||||    
T  31591106 ataaaagggcaacccggtgcactagagctcccgcatatgcaaggtccgggaagg 31591159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 10693073 - 10693123
Alignment:
Q  219 aaagggcaacctggttcactagagctcccgtatatgcaggatccgggaagg 269  Q
    |||||||||||  || |||||||||||||| ||||||||| ||||||||||    
T  10693073 aaagggcaacccagtgcactagagctcccgcatatgcagggtccgggaagg 10693123  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 45018923 - 45018973
Alignment:
Q  219 aaagggcaacctggttcactagagctcccgtatatgcaggatccgggaagg 269  Q
    ||||||||||||||| ||||| |||||||| ||| ||||| ||||||||||    
T  45018923 aaagggcaacctggtgcactaaagctcccgcatacgcagggtccgggaagg 45018973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 269
Target Start/End: Complemental strand, 11741927 - 11741878
Alignment:
Q  220 aagggcaacctggttcactagagctcccgtatatgcaggatccgggaagg 269  Q
    |||||||||| ||| |||||||||||||| || ||||| |||||||||||    
T  11741927 aagggcaacccggtgcactagagctcccgcatgtgcagaatccgggaagg 11741878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 257
Target Start/End: Complemental strand, 42477005 - 42476968
Alignment:
Q  220 aagggcaacctggttcactagagctcccgtatatgcag 257  Q
    |||||||||||||| |||||||||||||| ||||||||    
T  42477005 aagggcaacctggtgcactagagctcccgcatatgcag 42476968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 1354755 - 1354807
Alignment:
Q  217 taaaagggcaacctggttcactagagctcccgtatatgcaggatccgggaagg 269  Q
    ||||||||||||| ||| |||||||||||||| ||||||||| ||||||||||    
T  1354755 taaaagggcaacccggtgcactagagctcccgcatatgcagggtccgggaagg 1354807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 269
Target Start/End: Complemental strand, 1347098 - 1347047
Alignment:
Q  218 aaaagggcaacctggttcactagagctcccgtatatgcaggatccgggaagg 269  Q
    |||||||||||| ||| |||||||||||||| ||||||||| ||||||||||    
T  1347098 aaaagggcaacccggtgcactagagctcccgcatatgcagggtccgggaagg 1347047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 269
Target Start/End: Complemental strand, 25557859 - 25557808
Alignment:
Q  218 aaaagggcaacctggttcactagagctcccgtatatgcaggatccgggaagg 269  Q
    |||||||||||| ||| |||||||||||||| ||||||||| ||||||||||    
T  25557859 aaaagggcaacccggtgcactagagctcccgcatatgcagggtccgggaagg 25557808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 269
Target Start/End: Complemental strand, 26097294 - 26097243
Alignment:
Q  218 aaaagggcaacctggttcactagagctcccgtatatgcaggatccgggaagg 269  Q
    |||||||||||| ||| |||||||||||||| ||||||||| ||||||||||    
T  26097294 aaaagggcaacccggtgcactagagctcccgcatatgcagggtccgggaagg 26097243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 32703559 - 32703507
Alignment:
Q  217 taaaagggcaacctggttcactagagctcccgtatatgcaggatccgggaagg 269  Q
    ||||||||||||| ||| |||||||||||||| ||||||||| ||||||||||    
T  32703559 taaaagggcaacccggtgcactagagctcccgcatatgcagggtccgggaagg 32703507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 269
Target Start/End: Original strand, 16028623 - 16028674
Alignment:
Q  218 aaaagggcaacctggttcactagagctcccgtatatgcaggatccgggaagg 269  Q
    |||||||||||| ||| |||||||||||||| ||||||||| ||||||||||    
T  16028623 aaaagggcaacccggtgcactagagctcccgcatatgcagggtccgggaagg 16028674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 263
Target Start/End: Complemental strand, 19438800 - 19438757
Alignment:
Q  220 aagggcaacctggttcactagagctcccgtatatgcaggatccg 263  Q
    |||||||||||||| |||||||||||||| ||||||||| ||||    
T  19438800 aagggcaacctggtgcactagagctcccgcatatgcagggtccg 19438757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 269
Target Start/End: Complemental strand, 35710447 - 35710396
Alignment:
Q  218 aaaagggcaacctggttcactagagctcccgtatatgcaggatccgggaagg 269  Q
    |||||||||||| ||| |||||||||||||| ||||||| | ||||||||||    
T  35710447 aaaagggcaacccggtgcactagagctcccgcatatgcatgttccgggaagg 35710396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 30877564 - 30877614
Alignment:
Q  219 aaagggcaacctggttcactagagctcccgtatatgcaggatccgggaagg 269  Q
    ||||||||||| ||| |||||||||||||  ||||||||| ||||||||||    
T  30877564 aaagggcaacccggtgcactagagctcccacatatgcagggtccgggaagg 30877614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 34154814 - 34154864
Alignment:
Q  219 aaagggcaacctggttcactagagctcccgtatatgcaggatccgggaagg 269  Q
    ||||||||||| ||| |||||||||| ||| ||||||||| ||||||||||    
T  34154814 aaagggcaacccggtgcactagagctaccgcatatgcagggtccgggaagg 34154864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 16957451 - 16957399
Alignment:
Q  217 taaaagggcaacctggttcactagagctcccgtatatgcaggatccgggaagg 269  Q
    ||||||||||||| ||| ||||| |||||||| ||| ||||| ||||||||||    
T  16957451 taaaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaagg 16957399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 38879720 - 38879668
Alignment:
Q  217 taaaagggcaacctggttcactagagctcccgtatatgcaggatccgggaagg 269  Q
    ||||||||||||| ||| ||||| |||||||| ||| ||||| ||||||||||    
T  38879720 taaaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaagg 38879668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 269
Target Start/End: Complemental strand, 30713 - 30662
Alignment:
Q  218 aaaagggcaacctggttcactagagctcccgtatatgcaggatccgggaagg 269  Q
    |||||||||||| ||| |||||||||||||| ||||||||| ||||||||||    
T  30713 aaaagggcaacccggtgcactagagctcccgcatatgcagggtccgggaagg 30662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 269
Target Start/End: Original strand, 30454096 - 30454147
Alignment:
Q  218 aaaagggcaacctggttcactagagctcccgtatatgcaggatccgggaagg 269  Q
    |||||||||||| ||| |||||||||||||| ||||||||| ||||||||||    
T  30454096 aaaagggcaacccggtgcactagagctcccgcatatgcagggtccgggaagg 30454147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 19729478 - 19729425
Alignment:
Q  216 ataaaagggcaacctggttcactagagctcccgtatatgcaggatccgggaagg 269  Q
    |||||||||||| |  || |||||||||||||||||||||||| ||||||||||    
T  19729478 ataaaagggcaatccagtgcactagagctcccgtatatgcagggtccgggaagg 19729425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 269
Target Start/End: Original strand, 12670249 - 12670300
Alignment:
Q  218 aaaagggcaacctggttcactagagctcccgtatatgcaggatccgggaagg 269  Q
    ||||||| |||| ||| |||||||||||||| ||||||||| ||||||||||    
T  12670249 aaaagggtaacccggtgcactagagctcccgcatatgcagggtccgggaagg 12670300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 269
Target Start/End: Complemental strand, 26102653 - 26102602
Alignment:
Q  218 aaaagggcaacctggttcactagagctcccgtatatgcaggatccgggaagg 269  Q
    |||||||||||| ||| |||||||||||||| ||| ||||| ||||||||||    
T  26102653 aaaagggcaacccggtgcactagagctcccgcataagcagggtccgggaagg 26102602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 39460991 - 39461044
Alignment:
Q  216 ataaaagggcaacctggttcactagagctcccgtatatgcaggatccgggaagg 269  Q
    |||||||||||||| ||| ||||| |||||||| ||| ||||| ||||||||||    
T  39460991 ataaaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaagg 39461044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 269
Target Start/End: Original strand, 11054147 - 11054198
Alignment:
Q  218 aaaagggcaacctggttcactagagctcccgtatatgcaggatccgggaagg 269  Q
    |||||||||||| ||| |||||||||||||| ||||||||| ||||||||||    
T  11054147 aaaagggcaacccggtgcactagagctcccgcatatgcagggtccgggaagg 11054198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 269
Target Start/End: Complemental strand, 38786745 - 38786694
Alignment:
Q  218 aaaagggcaacctggttcactagagctcccgtatatgcaggatccgggaagg 269  Q
    |||||||||||| ||| |||||||||||||| ||||||||| ||||||||||    
T  38786745 aaaagggcaacccggtgcactagagctcccgcatatgcagggtccgggaagg 38786694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 20225117 - 20225067
Alignment:
Q  219 aaagggcaacctggttcactagagctcccgtatatgcaggatccgggaagg 269  Q
    ||||||||||| ||| |||||||||||||| ||||||||| ||||||||||    
T  20225117 aaagggcaacccggtgcactagagctcccgcatatgcagggtccgggaagg 20225067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 269
Target Start/End: Original strand, 29207900 - 29207948
Alignment:
Q  221 agggcaacctggttcactagagctcccgtatatgcaggatccgggaagg 269  Q
    ||||||||| ||| |||||||||||||| ||||||||| ||||||||||    
T  29207900 agggcaacccggtgcactagagctcccgcatatgcagggtccgggaagg 29207948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 269
Target Start/End: Complemental strand, 23501925 - 23501874
Alignment:
Q  218 aaaagggcaacctggttcactagagctcccgtatatgcaggatccgggaagg 269  Q
    |||||||||||| ||| ||||| |||||||| ||||||||| ||||||||||    
T  23501925 aaaagggcaacccggtgcactaaagctcccgcatatgcagggtccgggaagg 23501874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 269
Target Start/End: Complemental strand, 32484369 - 32484318
Alignment:
Q  218 aaaagggcaacctggttcactagagctcccgtatatgcaggatccgggaagg 269  Q
    |||||||||||| ||| ||||| |||||||| ||||||||| ||||||||||    
T  32484369 aaaagggcaacccggtgcactaaagctcccgcatatgcagggtccgggaagg 32484318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 14983972 - 14983919
Alignment:
Q  216 ataaaagggcaacctggttcactagagctcccgtatatgcaggatccgggaagg 269  Q
    ||||||||||||| |||| ||||| |||||||| ||| ||||| ||||||||||    
T  14983972 ataaaagggcaacatggtacactaaagctcccgcatacgcagggtccgggaagg 14983919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 269
Target Start/End: Original strand, 24132 - 24183
Alignment:
Q  218 aaaagggcaacctggttcactagagctcccgtatatgcaggatccgggaagg 269  Q
    |||||||||| | ||| |||||||||||||| ||||||||| ||||||||||    
T  24132 aaaagggcaatccggtgcactagagctcccgcatatgcagggtccgggaagg 24183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 72867 - 72917
Alignment:
Q  219 aaagggcaacctggttcactagagctcccgtatatgcaggatccgggaagg 269  Q
    ||||||||||||||| ||||| |||||||| ||| ||||| ||||||||||    
T  72867 aaagggcaacctggtgcactaaagctcccgcatacgcaggttccgggaagg 72917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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