View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21236_low_11 (Length: 294)
Name: NF21236_low_11
Description: NF21236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21236_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 22769878 - 22769631
Alignment:
| Q |
1 |
cagaaaataagagaataagaaaaggaaatagaatactaagtaggaagccatgaaaaaatgacagattaattaaggagagaaatatgaatgaatatannnn |
100 |
Q |
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| T |
22769878 |
cagaaaataagagaataagaaaaggaaatagaatactaagtaggaagccatgaaaaaatgacagattaattaaggagagaaatatgaatgaatatatttt |
22769779 |
T |
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| Q |
101 |
nnnggtggtgtaaatatgtgagtatgaatgtataacagagttctctagtgacgtttgccattagctgtgttgattactacagtagttgacttgacttgga |
200 |
Q |
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| T |
22769778 |
tttggtggtgta--------------------taacagaattctctagtgacgtttgccattagctgtgttgattactacagtagttgacttgacttgga |
22769699 |
T |
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| Q |
201 |
aaattcacttaaaaagaagacttgagaaattggccacaaagagtgtattgagaattttattggagccctta |
271 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22769698 |
aaattcacttaaa---aagacttgagaaattggccacaaagagtgtattgagaattttattggagccctta |
22769631 |
T |
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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 250
Target Start/End: Complemental strand, 15528698 - 15528632
Alignment:
| Q |
182 |
gtagttgacttgacttggaaaattcacttaaaaagaagacttgagaaattggccacaaagagtgtattg |
250 |
Q |
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| T |
15528698 |
gtagttgacttgacttcgacaattcacttaga--gaagacttaagaaattggccagaaagagtgtattg |
15528632 |
T |
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