View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21236_low_12 (Length: 287)
Name: NF21236_low_12
Description: NF21236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21236_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 9 - 216
Target Start/End: Complemental strand, 27744529 - 27744322
Alignment:
| Q |
9 |
aatgccgaagaaaatcagattttaaattgagtttgttttctatatacctgcctctcttgtcgattggtgcagaataagagaaaaaagaattgtcattgaa |
108 |
Q |
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| T |
27744529 |
aatggcgaagaaaatcagattttaaagtgaggttgttttctatatacctgcctctcttgtcgattggtgcagaataagagaaaaaagaattgtcattgaa |
27744430 |
T |
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| Q |
109 |
catgtgcttgaagcgagagtcaattgccacttttgtttcatcctttcgagcctctcgaaaacgagggtctgtgtgcattcctacaaatcgaggatcactg |
208 |
Q |
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| T |
27744429 |
catgtgcttgaagcgagagtcaattgccacttttgtttcatcctttcgagcctctcgaaaacgagggtctgtgtgcattcctacaaatcgaggatcactg |
27744330 |
T |
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| Q |
209 |
ataagctt |
216 |
Q |
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|||||||| |
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| T |
27744329 |
ataagctt |
27744322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 207 - 270
Target Start/End: Original strand, 27745957 - 27746020
Alignment:
| Q |
207 |
tgataagcttatttatgctctatgataataattggtatattttgactcctatcaatgctcaggt |
270 |
Q |
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| T |
27745957 |
tgatatgcttatttatgctctatgataataattggtatattttgactcctatcaatgctcaggt |
27746020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 49513321 - 49513268
Alignment:
| Q |
163 |
tcgaaaacgagggtctgtgtgcattcctacaaatcgaggatcactgataagctt |
216 |
Q |
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||||||| ||||||||||| ||| ||||||||| ||||||||| |||||||||| |
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| T |
49513321 |
tcgaaaaagagggtctgtgagcactcctacaaaccgaggatcattgataagctt |
49513268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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