View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21236_low_15 (Length: 264)
Name: NF21236_low_15
Description: NF21236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21236_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 68 - 197
Target Start/End: Original strand, 11119967 - 11120101
Alignment:
| Q |
68 |
gtatgcatttgttgaattcatt-----ttaccttttatgtaaatatttacccaattgcattaatagatatcagttcccaaattgttcagttaattaagtt |
162 |
Q |
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| T |
11119967 |
gtatgcatttgttgaattcattatattttaccttttatgtaaatatttacccaattgcattaatagaaatcagttcccaaattgttcagttaattaagtt |
11120066 |
T |
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| Q |
163 |
caaaagcaattatgaaatcaaaatgggattgaatc |
197 |
Q |
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| T |
11120067 |
caaaagcaattatgaaatcaaaatgggattgaatc |
11120101 |
T |
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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 11119869 - 11119916
Alignment:
| Q |
1 |
atatctataaattattttggaacagacacatcatataaatatgtgtaa |
48 |
Q |
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| T |
11119869 |
atatatataaattattttggaacagacacatcatataaatatgtgtaa |
11119916 |
T |
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