View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21236_low_16 (Length: 234)
Name: NF21236_low_16
Description: NF21236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21236_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 15 - 218
Target Start/End: Original strand, 43828619 - 43828819
Alignment:
| Q |
15 |
gcagagattttgcattgcatggctctgtagctagttaactgaatatgagaggaataatgggaacttctcctcgttctgttgaagctagacatcgtttgcc |
114 |
Q |
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| T |
43828619 |
gcagagattttgcattgcatggctctgtagctagttaattgaatatgagaggaataatgggaacttctcctcgttctgttgaagctagacatcgtttgcc |
43828718 |
T |
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| Q |
115 |
ttcatccatgtgagttccttaattttgttcttcattcccaccttttcttagttctatatgctgcaaagagttatgtttaatttctcttaaatcaagtttc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
43828719 |
ttcatccatgtgagttccttaattttgttcttcattcccaccttttcttagttctata---tgcaaagagttatgtttaatttctcttaaatcaagtttc |
43828815 |
T |
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| Q |
215 |
ataa |
218 |
Q |
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|||| |
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| T |
43828816 |
ataa |
43828819 |
T |
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