View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21236_low_17 (Length: 226)

Name: NF21236_low_17
Description: NF21236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21236_low_17
NF21236_low_17
[»] chr5 (1 HSPs)
chr5 (18-226)||(37283669-37283885)
[»] chr3 (3 HSPs)
chr3 (92-138)||(51380952-51380998)
chr3 (142-217)||(31984378-31984453)
chr3 (184-217)||(51381064-51381097)
[»] chr2 (6 HSPs)
chr2 (92-138)||(12037300-12037346)
chr2 (184-226)||(25271855-25271897)
chr2 (92-138)||(27249856-27249902)
chr2 (92-139)||(42013371-42013418)
chr2 (192-226)||(27249744-27249778)
chr2 (92-138)||(29699598-29699644)
[»] chr4 (1 HSPs)
chr4 (92-138)||(21512011-21512057)
[»] chr1 (2 HSPs)
chr1 (92-138)||(69006-69052)
chr1 (92-139)||(46878156-46878203)
[»] chr7 (2 HSPs)
chr7 (142-216)||(2729800-2729875)
chr7 (92-124)||(2729911-2729943)
[»] chr6 (3 HSPs)
chr6 (92-139)||(3445461-3445508)
chr6 (92-139)||(33629356-33629403)
chr6 (160-216)||(2285575-2285632)
[»] chr8 (4 HSPs)
chr8 (160-217)||(41581132-41581190)
chr8 (92-138)||(42456943-42456989)
chr8 (98-139)||(5920882-5920923)
chr8 (92-129)||(16677140-16677177)


Alignment Details
Target: chr5 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 37283885 - 37283669
Alignment:
Q  18 tggactgaattgggctttgagtttcggcttagtgtcatttgttgctagcaggacaa----ttccggcttagaaaaatgt----cacacttcactcaatgc 109  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    |||||||||||||||||||    |||||||||||||||||    
T  37283885 tggactgaattgggctttgagtttcggcttagagtcatttgttgctagcaggacaaggagttccggcttagaaaaatgttgttcacacttcactcaatgc 37283786  T
Q  110 taggaaacacgagtagtttatcaatataatttattttaacgggtgggagataactgttgatggatatttatgtcttttctgatgtgtttcagccttgttt 209  Q
    ||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37283785 taggaaacacgagtaatttatcaatataatttattttaacgggcggcagataactgttgatggatatttatgtcttttctgatgtgtttcagctttgttt 37283686  T
Q  210 gaagtgtatagaacaat 226  Q
    |||||||||||||||||    
T  37283685 gaagtgtatagaacaat 37283669  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 51380952 - 51380998
Alignment:
Q  92 tcacacttcactcaatgctaggaaacacgagtagtttatcaatataa 138  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||    
T  51380952 tcacacttcactcaatgctaggaaacactagtaatttatcaatataa 51380998  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 217
Target Start/End: Complemental strand, 31984453 - 31984378
Alignment:
Q  142 attttaacgggtgggagataactgttgatggatatttatgtcttttctgatgtgtttcagccttgtttgaagtgta 217  Q
    |||||||| || || || |||||| ||||||| |||||||| ||||||| | | ||||| ||||||||||||||||    
T  31984453 attttaaccggcggcagttaactgctgatggacatttatgttttttctggtatatttcaaccttgtttgaagtgta 31984378  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 217
Target Start/End: Original strand, 51381064 - 51381097
Alignment:
Q  184 ttttctgatgtgtttcagccttgtttgaagtgta 217  Q
    ||||||| ||||||||||||||||||||||||||    
T  51381064 ttttctggtgtgtttcagccttgtttgaagtgta 51381097  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 12037300 - 12037346
Alignment:
Q  92 tcacacttcactcaatgctaggaaacacgagtagtttatcaatataa 138  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||    
T  12037300 tcacacttcactcaatgctaggaaacaccagtaatttatcaatataa 12037346  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 25271855 - 25271897
Alignment:
Q  184 ttttctgatgtgtttcagccttgtttgaagtgtatagaacaat 226  Q
    |||||||||||||||||||||||||||||||||| | ||||||    
T  25271855 ttttctgatgtgtttcagccttgtttgaagtgtaaacaacaat 25271897  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 27249902 - 27249856
Alignment:
Q  92 tcacacttcactcaatgctaggaaacacgagtagtttatcaatataa 138  Q
    ||||||||||||||||| |||||||||| |||| |||||||||||||    
T  27249902 tcacacttcactcaatgttaggaaacactagtaatttatcaatataa 27249856  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 139
Target Start/End: Original strand, 42013371 - 42013418
Alignment:
Q  92 tcacacttcactcaatgctaggaaacacgagtagtttatcaatataat 139  Q
    |||| ||||||||||||||||||||||| |||| ||||||||| ||||    
T  42013371 tcacgcttcactcaatgctaggaaacaccagtaatttatcaatttaat 42013418  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 226
Target Start/End: Complemental strand, 27249778 - 27249744
Alignment:
Q  192 tgtgtttcagccttgtttgaagtgtatagaacaat 226  Q
    |||||||||||||||||||||||||||| ||||||    
T  27249778 tgtgtttcagccttgtttgaagtgtatacaacaat 27249744  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 29699644 - 29699598
Alignment:
Q  92 tcacacttcactcaatgctaggaaacacgagtagtttatcaatataa 138  Q
    ||||||||||||||||| |||||||||| |||| |||| ||||||||    
T  29699644 tcacacttcactcaatgttaggaaacactagtaatttaccaatataa 29699598  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 21512011 - 21512057
Alignment:
Q  92 tcacacttcactcaatgctaggaaacacgagtagtttatcaatataa 138  Q
    |||||||||||||||||||||||||||| | || |||||||||||||    
T  21512011 tcacacttcactcaatgctaggaaacactactaatttatcaatataa 21512057  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 69052 - 69006
Alignment:
Q  92 tcacacttcactcaatgctaggaaacacgagtagtttatcaatataa 138  Q
    ||||||||||||||||||||||| |||| |||| |||||||||||||    
T  69052 tcacacttcactcaatgctaggacacactagtaatttatcaatataa 69006  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 139
Target Start/End: Original strand, 46878156 - 46878203
Alignment:
Q  92 tcacacttcactcaatgctaggaaacacgagtagtttatcaatataat 139  Q
    |||||||||||||||||||||||||||| | || ||||| ||||||||    
T  46878156 tcacacttcactcaatgctaggaaacaccaataatttataaatataat 46878203  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 2729875 - 2729800
Alignment:
Q  142 attttaacgggtgggagataactgttgatggatatttatgtctttt-ctgatgtgtttcagccttgtttgaagtgt 216  Q
    |||||||| ||||| || ||||||  |||||| ||||| ||||||| ||| ||||||||||||||||| |||||||    
T  2729875 attttaactggtggcagttaactgccgatggacatttacgtctttttctgttgtgtttcagccttgttagaagtgt 2729800  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 124
Target Start/End: Complemental strand, 2729943 - 2729911
Alignment:
Q  92 tcacacttcactcaatgctaggaaacacgagta 124  Q
    |||||||||||||||||||||||||||| ||||    
T  2729943 tcacacttcactcaatgctaggaaacaccagta 2729911  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 139
Target Start/End: Complemental strand, 3445508 - 3445461
Alignment:
Q  92 tcacacttcactcaatgctaggaaacacgagtagtttatcaatataat 139  Q
    ||||||||||| ||||||||||||| || |||| ||||||||||||||    
T  3445508 tcacacttcacacaatgctaggaaatactagtaatttatcaatataat 3445461  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 139
Target Start/End: Original strand, 33629356 - 33629403
Alignment:
Q  92 tcacacttcactcaatgctaggaaacacgagtagtttatcaatataat 139  Q
    |||||||||||||||||||||||||||  |||| |||| |||||||||    
T  33629356 tcacacttcactcaatgctaggaaacaatagtaatttaccaatataat 33629403  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 2285632 - 2285575
Alignment:
Q  160 taactgttgatggatatttatgtctttt-ctgatgtgtttcagccttgtttgaagtgt 216  Q
    |||||| ||||||| ||||| ||||||| || |||||||||| |||||||||||||||    
T  2285632 taactgctgatggacatttacgtctttttctaatgtgtttcaaccttgtttgaagtgt 2285575  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 41581132 - 41581190
Alignment:
Q  160 taactgttgatggatatttatgtctttt-ctgatgtgtttcagccttgtttgaagtgta 217  Q
    ||||||| |||||| ||||| ||||||| ||  ||||||||||||||||||||||||||    
T  41581132 taactgtcgatggacatttacgtctttttctagtgtgtttcagccttgtttgaagtgta 41581190  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 42456989 - 42456943
Alignment:
Q  92 tcacacttcactcaatgctaggaaacacgagtagtttatcaatataa 138  Q
    |||||||||||| ||||||||||||||| |||| |||| ||||||||    
T  42456989 tcacacttcacttaatgctaggaaacaccagtaatttaccaatataa 42456943  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 139
Target Start/End: Complemental strand, 5920923 - 5920882
Alignment:
Q  98 ttcactcaatgctaggaaacacgagtagtttatcaatataat 139  Q
    |||||||||||||||||||||| |||| |||| |||||||||    
T  5920923 ttcactcaatgctaggaaacaccagtactttaccaatataat 5920882  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 16677177 - 16677140
Alignment:
Q  92 tcacacttcactcaatgctaggaaacacgagtagttta 129  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  16677177 tcacacttcactcaatgctaggaaacaccagtaattta 16677140  T

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