View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21236_low_3 (Length: 423)
Name: NF21236_low_3
Description: NF21236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21236_low_3 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 13 - 423
Target Start/End: Complemental strand, 22770283 - 22769873
Alignment:
| Q |
13 |
cataggaggtttatcaggtgtagaagtaaagtagatatcataatcagcacagtttttatatttgaacttgttatcatggctattgtcatagccatgattg |
112 |
Q |
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| T |
22770283 |
cataggaggtttatcaggtgtagaagtaaagtagatatcataatcagcacagtttttatatttgaacttgttatcatggctattatcatagccatgattg |
22770184 |
T |
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| Q |
113 |
catacatagaagttaacagtgttaatgctgaagtttggcttattcttaattgactctaattcagaggagtttaggccatagatgataactgaattgttca |
212 |
Q |
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| T |
22770183 |
catacatagaagttaacagtgttaatgctgaagtttggcttattctttattggctctaattcagaggagtttaggccatagatgatagctgaattgttca |
22770084 |
T |
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| Q |
213 |
taaaactgatgctatcaatttcataggtttggtttatcaggttgattgttttcactgaactgttattgtcgcaaccgattatgtataagccacattctcg |
312 |
Q |
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| T |
22770083 |
tataactgatgctatcaatttcataggtttggtttatcaggttgattgttttcactgaactgttattgtcgcaaccgattatgtataagccacattctcg |
22769984 |
T |
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| Q |
313 |
tttatcgacggtggtaaaagggaaggagatttccccaagatatccacaggaagccttttcttctgcacattttgtatcccattctggtgcagcagagaga |
412 |
Q |
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| T |
22769983 |
tttatcgacggtggtaaaagggaaggagatttccccaagatatccacaggaaactttttcttttgcacattttgtatcccattctggtgcagcagagaga |
22769884 |
T |
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| Q |
413 |
agaagcagaaa |
423 |
Q |
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| T |
22769883 |
agaagcagaaa |
22769873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 121 - 360
Target Start/End: Complemental strand, 22781559 - 22781314
Alignment:
| Q |
121 |
gaagttaacagtgttaatgctgaagtttggcttattcttaattgactctaa------ttcagaggagtttaggccatagatgataactgaattgttcata |
214 |
Q |
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|||||||| ||||||||||||||| ||||| ||||||||| ||| ||||| || | |||||| ||| ||||||||||| ||||||||||||| |
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| T |
22781559 |
gaagttaatagtgttaatgctgaatattggcctattcttaaatgattctaaatttaatttatgagagtttgggctatagatgataattgaattgttcata |
22781460 |
T |
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| Q |
215 |
aaactgatgctatcaatttcataggtttggtttatcaggttgattgttttcactgaactgttattgtcgcaaccgattatgtataagccacattctcgtt |
314 |
Q |
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| T |
22781459 |
taatacatgctatcaattatataggtttggtctctgagttgaattgttttcactaaactgctgttgtcacaaccagatatgtaatagccacattctgagt |
22781360 |
T |
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| Q |
315 |
tatcgacggtggtaaaagggaaggagatttccccaagatatccaca |
360 |
Q |
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| T |
22781359 |
cattaacggtggtgaaaggggaggagatttctccaagatatccaca |
22781314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 22781643 - 22781585
Alignment:
| Q |
25 |
atcaggtgtagaagtaaagtagatatcataatcagcacagtttttatatttgaacttgt |
83 |
Q |
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| T |
22781643 |
atcaggtatagaagtgaagtagatatcgtaatcggaacagtttctatatttgaacatgt |
22781585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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