View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21236_low_4 (Length: 417)
Name: NF21236_low_4
Description: NF21236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21236_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 11 - 398
Target Start/End: Original strand, 6940750 - 6941127
Alignment:
| Q |
11 |
aatatcaagattggattagaagcaattaaaggcaagaattaaagctctgttatatgatttctatcaaaccatt--gtgnnnnnnnattgctttagaagac |
108 |
Q |
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| T |
6940750 |
aatatcaagattggattagaagcaattaaaggcaagaattaaagctctgctatatgatttctatcaaaccattttgtgtttttttattgcttcagaagac |
6940849 |
T |
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| Q |
109 |
tatctgttggaaactggttttaattgtaagaattcgaactgaaactcgatttgtgtcagtttacatcaaataactacctaatcacccaaatgcattgctt |
208 |
Q |
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| T |
6940850 |
tatctgttggaaactggttttaattgtaagaattcgaactgaaactcgatttgtgtcagtttac-------------ctaatcacccaaatgcattgctt |
6940936 |
T |
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| Q |
209 |
ccttatgtatttaaaactacagcctaaggcacaatcatggcacaaactggcttatttcttacagtaaaaaatttaatgaagacgtacatggat-nnnnnn |
307 |
Q |
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| T |
6940937 |
ccttatgtatttaaaactacagcctaaggcacaaccatggcacaaactggcttattacttacagtaaaaaatttaatgaagactctcttggataaaaaaa |
6941036 |
T |
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| Q |
308 |
nnnggtttgtaattttttaagtaatttcagataggacacacattgacacatatagaacactgtccatagatattctaatgattaaaaggtg |
398 |
Q |
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| T |
6941037 |
aaaggtttgtaattttttaagtaatttcagataggacacacattgacacatatagaacacagtccatagatattctaatgattaaaaggtg |
6941127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 102 - 398
Target Start/End: Original strand, 6944051 - 6944347
Alignment:
| Q |
102 |
agaagactatctgttggaaactggttttaattgtaagaattcgaactgaaactcgatttgtgtcagtttacatcaaataactacctaatcacccaaatgc |
201 |
Q |
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| T |
6944051 |
agaagactatctgttggaaactggttttaagtgtaagaattcgaactgaaactcgatttgtgtcggtttacatcaaataactatctaatcacccaaatgc |
6944150 |
T |
|
| Q |
202 |
attgcttccttatgtatttaaaactacagcctaaggcacaatcatggcacaaactggcttatttcttacagtaaaaaatttaatgaagacgtacatggat |
301 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
6944151 |
attgcttccttatgcatttaaaactacagcctaaggcacaaccatggcacaaactggcttatttcttacagtaaaaaatttaatgaagactctcttggat |
6944250 |
T |
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| Q |
302 |
nnnnnnnnnggtttgtaattttttaagtaatttcagataggacacacattgacacatatagaacactgtccatagatattctaatgattaaaaggtg |
398 |
Q |
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| T |
6944251 |
aaaaaaaaaggtttgtaattttttaagtaatttcagataggacacacattgacacatatagaacacagtccagagatattctaatgattaaaaggtg |
6944347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 6548932 - 6548867
Alignment:
| Q |
11 |
aatatcaagattggattagaagcaa-ttaaaggcaagaattaaagctctgttatatgatttctatcaaa |
78 |
Q |
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| T |
6548932 |
aatatcaagattggattagaagcaaattaaag---aaaattaaagctctgttatatgatttctatcaaa |
6548867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 6943939 - 6943977
Alignment:
| Q |
11 |
aatatcaagattggattagaagcaattaaaggcaagaat |
49 |
Q |
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| T |
6943939 |
aatatcaagattggattagaagcaattaaaggcaagaat |
6943977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 8572179 - 8572142
Alignment:
| Q |
11 |
aatatcaagattggattagaagcaattaaaggcaagaa |
48 |
Q |
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| T |
8572179 |
aatatcaagattggtttagaaacaattaaaggcaagaa |
8572142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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