View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21236_low_8 (Length: 386)

Name: NF21236_low_8
Description: NF21236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21236_low_8
NF21236_low_8
[»] chr4 (3 HSPs)
chr4 (10-372)||(1726251-1726613)
chr4 (21-69)||(47101353-47101401)
chr4 (17-72)||(2428676-2428731)
[»] chr3 (3 HSPs)
chr3 (29-171)||(49103496-49103638)
chr3 (16-69)||(43490078-43490131)
chr3 (17-74)||(49532581-49532638)
[»] chr2 (1 HSPs)
chr2 (17-74)||(44648681-44648738)
[»] chr6 (1 HSPs)
chr6 (23-69)||(10030004-10030050)
[»] chr1 (2 HSPs)
chr1 (23-69)||(44331788-44331834)
chr1 (17-73)||(40396255-40396311)
[»] chr8 (1 HSPs)
chr8 (16-69)||(38653154-38653207)
[»] chr7 (1 HSPs)
chr7 (17-69)||(3160291-3160343)


Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 10 - 372
Target Start/End: Original strand, 1726251 - 1726613
Alignment:
Q  10 aagaaaatggttaggaacatttgaaacagcagaagatgcagcaagagcatatgatgaagcagcaagattaatgtgtggaccaaaagcacgtaccaatttc 109  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1726251 aagaatatggttaggaacatttgaaacagcagaagatgcagcaagagcatatgatgaagcagcaagattaatgtgtggaccaaaagcacgtaccaatttc 1726350  T
Q  110 ccatacaacccaaatggaccacaatcttcttcatctaagcttctttcagcaactttaactgcaaagttaaataagtgtcacatggcttctctttctcttc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1726351 ccatacaacccaaatggaccacaatcttcttcatctaagcttctttcagcaactttaactgcaaagttaaataagtgtcacatggcttctctttctcttc 1726450  T
Q  210 aaatgaccaaacaacaacaaccaccacaaaaagagccacaacaagtttcatcacaaagtttcaattcttccattaatagtaacacttttgtctatgggaa 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1726451 aaatgaccaaacaacaacaaccaccacaaaaagagccacaacaagtttcatcacaaagtttcaattcttccattaatagtaacacttttgtctatgggaa 1726550  T
Q  310 tgacattggtggaacaagtggtgaaactagtttaattagatggcttgatgaaggtaataattg 372  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1726551 tgacattggtggaacaagtggtgaaactagtttaattagatggcttgatgaaggtaataattg 1726613  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 47101401 - 47101353
Alignment:
Q  21 taggaacatttgaaacagcagaagatgcagcaagagcatatgatgaagc 69  Q
    ||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  47101401 taggaacatttgaaacagcagaagaagcagcaagagcatatgatcaagc 47101353  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 2428731 - 2428676
Alignment:
Q  17 tggttaggaacatttgaaacagcagaagatgcagcaagagcatatgatgaagcagc 72  Q
    ||||||||||||||||| ||||| ||||| ||||| ||||||||||||||||||||    
T  2428731 tggttaggaacatttgagacagctgaagaagcagctagagcatatgatgaagcagc 2428676  T

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Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 29 - 171
Target Start/End: Complemental strand, 49103638 - 49103496
Alignment:
Q  29 tttgaaacagcagaagatgcagcaagagcatatgatgaagcagcaagattaatgtgtggaccaaaagcacgtaccaatttcccatacaacccaaatggac 128  Q
    |||||||| ||||| |||||||| |||||||| ||||||||||||||||||||||||||| |||  ||| | || |||||||| |||||||| ||||       
T  49103638 tttgaaactgcagaggatgcagctagagcatacgatgaagcagcaagattaatgtgtggaacaagggcaagaacaaatttcccttacaaccccaatgtgt 49103539  T
Q  129 cacaatcttcttcatctaagcttctttcagcaactttaactgc 171  Q
    ||||||| || || ||||||||||| |||||||||||||||||    
T  49103538 cacaatcatcatcttctaagcttctctcagcaactttaactgc 49103496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 43490131 - 43490078
Alignment:
Q  16 atggttaggaacatttgaaacagcagaagatgcagcaagagcatatgatgaagc 69  Q
    |||||||||||||||||||||||| ||||  || || |||||||||||||||||    
T  43490131 atggttaggaacatttgaaacagctgaagcagctgctagagcatatgatgaagc 43490078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 49532581 - 49532638
Alignment:
Q  17 tggttaggaacatttgaaacagcagaagatgcagcaagagcatatgatgaagcagcaa 74  Q
    ||||||||||||||||| || |||||||  |||||||||||||||||| |||| ||||    
T  49532581 tggttaggaacatttgagacggcagaagcagcagcaagagcatatgatcaagctgcaa 49532638  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 44648738 - 44648681
Alignment:
Q  17 tggttaggaacatttgaaacagcagaagatgcagcaagagcatatgatgaagcagcaa 74  Q
    ||||||||||||||||||||||| ||||| ||||| | ||||||||||||||||||||    
T  44648738 tggttaggaacatttgaaacagctgaagaagcagctaaagcatatgatgaagcagcaa 44648681  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 10030004 - 10030050
Alignment:
Q  23 ggaacatttgaaacagcagaagatgcagcaagagcatatgatgaagc 69  Q
    ||||||||||||||||| || || ||||||||||| |||||||||||    
T  10030004 ggaacatttgaaacagctgaggaagcagcaagagcttatgatgaagc 10030050  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 44331834 - 44331788
Alignment:
Q  23 ggaacatttgaaacagcagaagatgcagcaagagcatatgatgaagc 69  Q
    |||||||||||||| ||||||| |||||||||||| || ||||||||    
T  44331834 ggaacatttgaaactgcagaagctgcagcaagagcttacgatgaagc 44331788  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 40396255 - 40396311
Alignment:
Q  17 tggttaggaacatttgaaacagcagaagatgcagcaagagcatatgatgaagcagca 73  Q
    |||||||| |||||||||||||| |||||||| ||||  |||||||||  |||||||    
T  40396255 tggttagggacatttgaaacagctgaagatgctgcaattgcatatgatacagcagca 40396311  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 38653207 - 38653154
Alignment:
Q  16 atggttaggaacatttgaaacagcagaagatgcagcaagagcatatgatgaagc 69  Q
    ||||||||| |||||||||||||| ||||||||||| | ||| |||||| ||||    
T  38653207 atggttaggtacatttgaaacagctgaagatgcagctaaagcctatgatcaagc 38653154  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 3160291 - 3160343
Alignment:
Q  17 tggttaggaacatttgaaacagcagaagatgcagcaagagcatatgatgaagc 69  Q
    ||||||||||| ||||| ||||| ||||| || |||||||| |||||||||||    
T  3160291 tggttaggaacttttgatacagctgaagaagctgcaagagcctatgatgaagc 3160343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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