View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21236_low_9 (Length: 381)
Name: NF21236_low_9
Description: NF21236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21236_low_9 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 287 - 381
Target Start/End: Original strand, 9994129 - 9994223
Alignment:
| Q |
287 |
gttctctgatacgtttaattcagtaaagtatgacactaaaaattggacatagctaaaatgcatattaagtattggaacacaagctaaaatgccgt |
381 |
Q |
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| T |
9994129 |
gttctctgatacgtttaattcagtaaagtatgacactaaaaattggacatagctaaaatgcatattaagtattggaacacaagctaaaatgccgt |
9994223 |
T |
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Target: chr2 (Bit Score: 69; Significance: 7e-31; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 191 - 354
Target Start/End: Complemental strand, 38106818 - 38106654
Alignment:
| Q |
191 |
tgtatggctcagaatatcattacagctctatcaatcacaatttttcagaagcagaactggcattaagctgaattaattctcctcattgccaaatacgttc |
290 |
Q |
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| T |
38106818 |
tgtaaggctcagaatat-actacagctctatcaatcacgatttt-cagaagcagaactggcattaagctgaattaattctcctcacggccaaatacatcc |
38106721 |
T |
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| Q |
291 |
tctgatacgtttaattc---agtaaagtatgacactaaaaattggacatagctaaaatgcatattaa |
354 |
Q |
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| T |
38106720 |
tctgatacattaaattccttcctgaagtataacactaataattgaaggtagctaaaatgcatattaa |
38106654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 32 - 145
Target Start/End: Original strand, 23945070 - 23945181
Alignment:
| Q |
32 |
aatccaataatgtcgtatgaatgtccctgcaccaagaaggttctccctggtaaacaggggcttggattcaaaacacctcaaataattcaaatataatata |
131 |
Q |
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| T |
23945070 |
aatccattaatgtcatatgaatgtcccttcaccaagtaggttctccct-gtaaacaggggcttggctccaaaacacctcaaacaa-tcggatatagtata |
23945167 |
T |
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| Q |
132 |
atcataggccaatc |
145 |
Q |
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| T |
23945168 |
atcataggccaatc |
23945181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 263
Target Start/End: Original strand, 23945245 - 23945311
Alignment:
| Q |
196 |
ggctcagaatatcattacagctctatcaatcacaatttttcagaagcagaactggcattaagctgaat |
263 |
Q |
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| T |
23945245 |
ggctcagaatat-attacagctctctcagtcacgaattttcagaagcagaactggcataaagctgaat |
23945311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 212 - 261
Target Start/End: Original strand, 16048592 - 16048641
Alignment:
| Q |
212 |
acagctctatcaatcacaatttttcagaagcagaactggcattaagctga |
261 |
Q |
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| T |
16048592 |
acagctctaacaatcacgatttttcagaagcagaactggcattaagctga |
16048641 |
T |
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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 113
Target Start/End: Original strand, 16048374 - 16048455
Alignment:
| Q |
31 |
aaatccaataatgtcgtatgaatgtccctgcaccaagaaggttctccctggtaaacaggggcttggattcaaaacacctcaaa |
113 |
Q |
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| T |
16048374 |
aaatccaatgaagtcatatgaatgaagcttcaccaagtaggttctccctg-taaacaggggcttggctccacaacacctcaaa |
16048455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 212 - 261
Target Start/End: Original strand, 3791669 - 3791718
Alignment:
| Q |
212 |
acagctctatcaatcacaatttttcagaagcagaactggcattaagctga |
261 |
Q |
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| T |
3791669 |
acagctctaacaatcacgatttttcagaagcagaactggcattaagctga |
3791718 |
T |
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