View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21237_high_10 (Length: 229)

Name: NF21237_high_10

Description: NF21237

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF21237_high_10

[»] chr2 (1 HSPs)

[»] chr4 (1 HSPs)

Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 1)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 140; E-Value: 2e-73

Query Start/End: Original strand, 17 - 216

Target Start/End: Original strand, 35551280 - 35551466

Alignment:

Q	17	attcccaacctattcctaaaggaatctaggtgccagaaatatcacaacgcgaggattgcagctgtttgttgcagcgaacatgtggaacgaccgtcgagat	116	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	35551280	attcccaacctattcctaaaggaatctaggtgccagaaatatcacaacgtgaggattgcagca-------------aacatgtggaacgaccgtcgagat	35551366	T

Q	117	tcaccaacgatttattagttccctttaccttaccaatgttctatattttcctgttttttccttcaatgtcatttttgtgcctatactaactcagaataat	216	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|
T	35551367	tcaccaacgatttattagttccctttaccttaccaatgttctatattttcctgttttttccttcaatctcatttttgtgcctatactaacacagaataat	35551466	T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 33; E-Value: 0.000000001

Query Start/End: Original strand, 35 - 141

Target Start/End: Original strand, 19294223 - 19294326

Alignment:

Q	35	aaggaatctaggtgccagaaatatcacaacgcgaggattgcagctgtttgttgcagcgaacatgtggaacgaccgtcgagattcaccaacgatttattag	134	Q
		\|\|\|\| \|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\| \|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\| \| \|\|\|\|\|\|\|
T	19294223	aagggatcgaggtgccacaaatatcacggcacgaggattgcagctgtttgctgcag---acgtgcggaacatccgtcgagattcgcccacaagttattag	19294319	T

Q	135	ttccctt	141	Q
		\|\|\|\|\|\|\|
T	19294320	ttccctt	19294326	T

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