View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21237_high_9 (Length: 243)
Name: NF21237_high_9
Description: NF21237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21237_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 8309211 - 8309097
Alignment:
| Q |
19 |
tggtggtgaaagaactcacggaagtgtgttttcttcaatggttgaacgactgaatgctgaaattcaaactcttttggggcatttaaagtatcttgttttt |
118 |
Q |
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| T |
8309211 |
tggtggtgaaagaactcacggaagtgtgttttcttcaatggttgaacgactgaatgctgaaattcaaactcttttggggcatttaaagtatcttgttttt |
8309112 |
T |
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| Q |
119 |
aataaattacgctgg |
133 |
Q |
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| T |
8309111 |
aataaattacgctgg |
8309097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 164 - 233
Target Start/End: Complemental strand, 8309060 - 8308991
Alignment:
| Q |
164 |
ataacatcgctatttcttgttgcctatccttcatcatcaaagtttgcaatttaaagtatgaacacctttg |
233 |
Q |
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| T |
8309060 |
ataacatcgctatttcttgttgcctatccttcatcatcaaagtttgcaatttaaagtatgaacacctttg |
8308991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 18281723 - 18281775
Alignment:
| Q |
173 |
ctatttcttgttgcctatccttcatcatcaaagtttgcaatttaaagtatgaa |
225 |
Q |
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| T |
18281723 |
ctatttcttgttgcctctccctcatcatcaaagtctggaaattaaagtatgaa |
18281775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 27662784 - 27662695
Alignment:
| Q |
19 |
tggtggtgaaagaactcacggaagtgtgttttcttcaatggttgaacgactgaatgctgaaattcaaactcttttggggcatttaaagta |
108 |
Q |
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| T |
27662784 |
tggtggagaaagaacacaagcaagtgtggtttcttcaatggtcgaacgagtgaatgctgaaattcaaactcttttggggcatttaaagta |
27662695 |
T |
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