View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21237_low_1 (Length: 687)
Name: NF21237_low_1
Description: NF21237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21237_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 325 - 577
Target Start/End: Complemental strand, 40882788 - 40882536
Alignment:
| Q |
325 |
gtattaaggattttgatgtctgttctactttaccatgactatctgtctcttcttttcttatttcattttgcaaagctaatttgtaattattattttttga |
424 |
Q |
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| T |
40882788 |
gtattaaggaatttgatgtctgttctactctaccatgactatttgtctcttcttttcttatttcattttgcaaggctaatttgtagttattattttttga |
40882689 |
T |
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| Q |
425 |
tttaaaggatttcaagttcccaagttaccaaatattttttactatgaatattgattcttcataaatatcatatttttccattgtcaagaaagtcaaagcg |
524 |
Q |
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| T |
40882688 |
tttaaaggatttcaagttcacaagttaccaaatattttttactatgaatattgattcttcataaatatcatatttttccattgtcaagaaagtcaaagcg |
40882589 |
T |
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| Q |
525 |
aatatagttcagacaaatacacattcgaaacttcaaaaagaactgcctcttat |
577 |
Q |
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| T |
40882588 |
aatatagttcagacaaatacacattcgagacttaaaaaagaaccgcctcttat |
40882536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 144 - 289
Target Start/End: Complemental strand, 40882969 - 40882824
Alignment:
| Q |
144 |
atttgacggattgtgttttctacttttgtttggatgcatgaaccataattaaatgaagatttagtagaaatttagcatagtcgtattgaaaaagatgtgt |
243 |
Q |
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| T |
40882969 |
atttgacagattgtgttttgtacttttgtttggatgcatgaaccataattaaatgaagatttagtagaaatttagcatagtcgtagtgaaaaagatgtgt |
40882870 |
T |
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| Q |
244 |
tggaagatataaggttagagattatatagttcatcacatggagatt |
289 |
Q |
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| T |
40882869 |
tggaagatataaggtcagagattaaatagttcatcgcatagagatt |
40882824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 40883095 - 40883035
Alignment:
| Q |
18 |
aaagcaagacgctgcgacattgcccatcgtggcagaggaatttatggggcacaaaccttga |
78 |
Q |
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| T |
40883095 |
aaagcaagacgctgcgacattgcccatcatggcagaggaatttatggggcacaacccttga |
40883035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 213; Significance: 1e-116; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 325 - 577
Target Start/End: Original strand, 8909214 - 8909466
Alignment:
| Q |
325 |
gtattaaggattttgatgtctgttctactttaccatgactatctgtctcttcttttcttatttcattttgcaaagctaatttgtaattattattttttga |
424 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
8909214 |
gtattaaggattttgatgtctgatctactttaccatgactatttgtctcttctttttctatttcattttgcaaagctaatttgtaattattattttttga |
8909313 |
T |
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| Q |
425 |
tttaaaggatttcaagttcccaagttaccaaatattttttactatgaatattgattcttcataaatatcatatttttccattgtcaagaaagtcaaagcg |
524 |
Q |
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| T |
8909314 |
tttaaaggatttcaagttcacaagttaccaaatattttttactatgaatattgattcttcataaatatcatatttttccattgtcaagaaattcaaagcg |
8909413 |
T |
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| Q |
525 |
aatatagttcagacaaatacacattcgaaacttcaaaaagaactgcctcttat |
577 |
Q |
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| T |
8909414 |
aatatagttcagacaaatacacattcaagacatcaaaaagaactgccacttat |
8909466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 144 - 289
Target Start/End: Original strand, 8909033 - 8909178
Alignment:
| Q |
144 |
atttgacggattgtgttttctacttttgtttggatgcatgaaccataattaaatgaagatttagtagaaatttagcatagtcgtattgaaaaagatgtgt |
243 |
Q |
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||||||| ||||||||||| ||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
8909033 |
atttgacagattgtgttttgtacttttgtttcgatgctttaaccataattaaatgaagatttagtagaaatttagcatagtcgtagtgaaaaagatgtgt |
8909132 |
T |
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| Q |
244 |
tggaagatataaggttagagattatatagttcatcacatggagatt |
289 |
Q |
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| T |
8909133 |
tggaagatataaggtcagagattatatagttcatcacatagagatt |
8909178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 8908908 - 8908967
Alignment:
| Q |
18 |
aaagcaagacgctgcgacattgcccatcgtggcagaggaatttatggggcacaaaccttga |
78 |
Q |
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| T |
8908908 |
aaagcaagacactgtgacattgcccatcgtggcaga-gaatttatggggcacaacccttga |
8908967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 653 - 681
Target Start/End: Original strand, 8909543 - 8909571
Alignment:
| Q |
653 |
ggccacggaatcactgttatcctttgcta |
681 |
Q |
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| T |
8909543 |
ggccacggaatcactgttatcctttgcta |
8909571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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