View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21237_low_12 (Length: 225)
Name: NF21237_low_12
Description: NF21237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21237_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 100 - 187
Target Start/End: Original strand, 1212620 - 1212707
Alignment:
| Q |
100 |
tctttccatcattatctcaacattcatataatttcaaccgagccaatcttctttggggacattgaaatctaatgtttttaatactctt |
187 |
Q |
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| T |
1212620 |
tctttccatcattatcacaacattcatataatttcaaccgagccaatcttctttggggacattgaaatctaatgtttttaatactctt |
1212707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 61 - 173
Target Start/End: Complemental strand, 9959211 - 9959099
Alignment:
| Q |
61 |
tttctagtacattaatcaaactcttcacctcactttttatctttccatcattatctcaacattcatataatttcaaccgagccaatcttctttggggaca |
160 |
Q |
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| T |
9959211 |
tttctagtgcattaatcaaactctccgcctcactctttgtctttgcatcattatcacaagattcatataattccgacaaagccaatcttatttggggaca |
9959112 |
T |
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| Q |
161 |
ttgaaatctaatg |
173 |
Q |
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| T |
9959111 |
ttgaaatctaatg |
9959099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 61 - 173
Target Start/End: Original strand, 32176990 - 32177102
Alignment:
| Q |
61 |
tttctagtacattaatcaaactcttcacctcactttttatctttccatcattatctcaacattcatataatttcaaccgagccaatcttctttggggaca |
160 |
Q |
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| T |
32176990 |
tttctagtgcattaatcaaactctccgcctcactctttgtctttgcatcattatcacaagattcatataattctgacaaagccaatcttatttggggaca |
32177089 |
T |
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| Q |
161 |
ttgaaatctaatg |
173 |
Q |
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| T |
32177090 |
ttgaaatctaatg |
32177102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 61 - 173
Target Start/End: Complemental strand, 12381859 - 12381747
Alignment:
| Q |
61 |
tttctagtacattaatcaaactcttcacctcactttttatctttccatcattatctcaacattcatataatttcaaccgagccaatcttctttggggaca |
160 |
Q |
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|||||||| ||||||||||||||| | ||||||| ||| ||||| |||||||||| ||| |||||||||||| || |||||||||| |||||||||| |
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| T |
12381859 |
tttctagtgcattaatcaaactctccgcctcactctttgtctttgcatcattatcacaagattcatataattcagacaaagccaatcttatttggggaca |
12381760 |
T |
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| Q |
161 |
ttgaaatctaatg |
173 |
Q |
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| T |
12381759 |
ttgaaatctaatg |
12381747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 70 - 172
Target Start/End: Original strand, 10056170 - 10056272
Alignment:
| Q |
70 |
cattaatcaaactcttcacctcact-ttttatctttccatcattatctcaacattcatataatttcaaccgagccaatcttctttggggacattgaaatc |
168 |
Q |
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||||||||||||||| ||| |||| |||| ||||| |||||||||| |||||||||||||||| ||| | |||||||||| |||||||||| | ||||| |
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| T |
10056170 |
cattaatcaaactctccacagcactcttttgtctttgcatcattatcacaacattcatataattccaa-caagccaatcttatttggggacaataaaatc |
10056268 |
T |
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| Q |
169 |
taat |
172 |
Q |
| |
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|||| |
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| T |
10056269 |
taat |
10056272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 71 - 172
Target Start/End: Original strand, 39534545 - 39534646
Alignment:
| Q |
71 |
attaatcaaactcttcacctcactttttatctttccatcattatctcaacattcatataatttcaaccgagccaatcttctttggggacattgaaatcta |
170 |
Q |
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|||||||||||||| ||| |||| ||| | ||| |||||||||| |||||||||||||||| ||| |||| ||||| |||||||||| ||||||||| |
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| T |
39534545 |
attaatcaaactctccacaccactctttgtatttacatcattatcacaacattcatataattctaacaaagccgatcttatttggggacaatgaaatcta |
39534644 |
T |
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| Q |
171 |
at |
172 |
Q |
| |
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|| |
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| T |
39534645 |
at |
39534646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 110 - 173
Target Start/End: Original strand, 23760201 - 23760264
Alignment:
| Q |
110 |
attatctcaacattcatataatttcaaccgagccaatcttctttggggacattgaaatctaatg |
173 |
Q |
| |
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|||||| ||||||||| |||||||| || |||||||||| ||||||||||||||||||||||| |
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| T |
23760201 |
attatcacaacattcaaataatttcgacaaagccaatcttgtttggggacattgaaatctaatg |
23760264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 187
Target Start/End: Original strand, 9085876 - 9085944
Alignment:
| Q |
119 |
acattcatataatttcaaccgagccaatcttctttggggacattgaaatctaatgtttttaatactctt |
187 |
Q |
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| T |
9085876 |
acattcatctaatttcaaccaagtcaatattctttggggacatttaaatataatggatttaacactctt |
9085944 |
T |
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