View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21237_low_2 (Length: 458)

Name: NF21237_low_2
Description: NF21237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21237_low_2
NF21237_low_2
[»] chr4 (9 HSPs)
chr4 (1-334)||(51822765-51823097)
chr4 (340-458)||(51823128-51823246)
chr4 (343-400)||(43480315-43480372)
chr4 (343-400)||(37306457-37306514)
chr4 (343-400)||(51475215-51475272)
chr4 (343-400)||(30111840-30111896)
chr4 (355-396)||(27362642-27362683)
chr4 (348-400)||(6540301-6540353)
chr4 (343-399)||(50251505-50251561)
[»] scaffold0922 (1 HSPs)
scaffold0922 (343-396)||(738-791)
[»] chr7 (10 HSPs)
chr7 (343-400)||(47822052-47822109)
chr7 (345-400)||(557428-557483)
chr7 (345-400)||(36738532-36738587)
chr7 (355-400)||(29310473-29310518)
chr7 (343-394)||(39237733-39237784)
chr7 (347-398)||(42815632-42815683)
chr7 (345-398)||(3399039-3399092)
chr7 (355-400)||(25695964-25696009)
chr7 (344-400)||(46947813-46947869)
chr7 (346-398)||(49160301-49160353)
[»] chr1 (5 HSPs)
chr1 (343-400)||(19078984-19079041)
chr1 (343-400)||(19126872-19126929)
chr1 (343-400)||(24886110-24886167)
chr1 (343-381)||(932052-932090)
chr1 (343-396)||(29068151-29068204)
[»] chr2 (6 HSPs)
chr2 (344-396)||(6951771-6951823)
chr2 (343-400)||(5140021-5140078)
chr2 (347-396)||(8503850-8503899)
chr2 (343-396)||(42635380-42635433)
chr2 (343-399)||(7709818-7709874)
chr2 (346-400)||(14960699-14960753)
[»] chr8 (5 HSPs)
chr8 (343-398)||(33440557-33440612)
chr8 (355-400)||(30085429-30085474)
chr8 (343-400)||(6580902-6580958)
chr8 (346-399)||(12212198-12212251)
chr8 (346-399)||(12456626-12456679)
[»] chr3 (7 HSPs)
chr3 (345-400)||(13639477-13639532)
chr3 (350-400)||(20909344-20909394)
chr3 (343-400)||(38602881-38602938)
chr3 (343-400)||(29235720-29235777)
chr3 (343-400)||(54186980-54187037)
chr3 (350-396)||(26223195-26223241)
chr3 (345-381)||(46893416-46893452)
[»] chr5 (4 HSPs)
chr5 (345-400)||(18237187-18237242)
chr5 (343-400)||(30892180-30892237)
chr5 (343-398)||(17190662-17190717)
chr5 (343-396)||(42958511-42958564)
[»] chr6 (1 HSPs)
chr6 (343-400)||(7447617-7447674)


Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 51822765 - 51823097
Alignment:
Q  1 catttatataatatatctnnnnnnnnctcttatgagttcaacatttttctaccaatcaataaatgttgattcagttgataaggagttagactcataaccc 100  Q
    ||||||||||||||||||        ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  51822765 catttatataatatatctaaaaaaaactcttatgagttcaacatttttctaccgatcaataaatgttgattcagttgataaggagttagactcataaccc 51822864  T
Q  101 actagaatatgagttcaactctcatcgtcagggtgagaacaaagtgaacgctcttagaactatgagaaatatatgaaccccaagacctnnnnnnnntaca 200  Q
    | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||        ||||    
T  51822865 attagaatatgagttcaactctcatcgtcagggtgaggacaaagtgaacgctcttagaactataagaaatatatgaaccccaagacct-aaaaaaataca 51822963  T
Q  201 tttttctacccctttgactactcatgaaacaatgtctaaaatataggtaaaaagttgggtccttcatatgtaactgttttatttatacttgcaagaagca 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  51822964 tttttctacccctttgactactcatgaaacaatgtctaaaatataggtaaaaagttgggtccttcatatgtaactgttttatttatacctgcaagaagca 51823063  T
Q  301 catttcaaaattcaaattcttcaataatttaacc 334  Q
     |||||||||||||||||||||||||||||||||    
T  51823064 tatttcaaaattcaaattcttcaataatttaacc 51823097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 340 - 458
Target Start/End: Original strand, 51823128 - 51823246
Alignment:
Q  340 tggaccacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcacccacaggatggnnnnnnnnnngtacaagatgctaaaatattc 439  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||| ||| | |||||          |||||||||||||||||||||    
T  51823128 tggaccacacattaaaaatggatcgcacataaagtggtgagacccacatgagtttcatccatatgatggttttttttttgtacaagatgctaaaatattc 51823227  T
Q  440 tggtaattaagaattcctt 458  Q
    |||||||||||||||||||    
T  51823228 tggtaattaagaattcctt 51823246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 343 - 400
Target Start/End: Original strand, 43480315 - 43480372
Alignment:
Q  343 accacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcaccca 400  Q
    ||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||    
T  43480315 accacacattgaaaatggatcccacataaagtggtgagacccacatgagtttcaccca 43480372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 400
Target Start/End: Complemental strand, 37306514 - 37306457
Alignment:
Q  343 accacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcaccca 400  Q
    ||||||||||| ||||||||| ||||||||||||||||| ||| ||||||||||||||    
T  37306514 accacacattggaaatggatctcacataaagtggtgagacccacatgagtttcaccca 37306457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 400
Target Start/End: Complemental strand, 51475272 - 51475215
Alignment:
Q  343 accacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcaccca 400  Q
    ||||||||||| ||||||||| ||||||||||||||||||||| ||| ||||||||||    
T  51475272 accacacattggaaatggatcccacataaagtggtgagatccacatgggtttcaccca 51475215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 343 - 400
Target Start/End: Original strand, 30111840 - 30111896
Alignment:
Q  343 accacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcaccca 400  Q
    ||||||||||| || || ||| ||||||||||||||||||||| ||||||||||||||    
T  30111840 accacacattggaattg-atcccacataaagtggtgagatccacatgagtttcaccca 30111896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 396
Target Start/End: Original strand, 27362642 - 27362683
Alignment:
Q  355 aaatggatcgcacataaagtggtgagatccatatgagtttca 396  Q
    ||||||||| ||| ||||||||||||||||| ||||||||||    
T  27362642 aaatggatctcacgtaaagtggtgagatccacatgagtttca 27362683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 400
Target Start/End: Original strand, 6540301 - 6540353
Alignment:
Q  348 acattgaaaatggatcgcacataaagtggtgagatccatatgagtttcaccca 400  Q
    |||||| |||||||||  ||| |||||||||||||||| || |||||||||||    
T  6540301 acattggaaatggatcctacacaaagtggtgagatccacataagtttcaccca 6540353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 399
Target Start/End: Complemental strand, 50251561 - 50251505
Alignment:
Q  343 accacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcaccc 399  Q
    ||||||| ||||||||||||| ||| |||| ||||||||  || |||||||||||||    
T  50251561 accacacgttgaaaatggatcccacgtaaaatggtgagactcacatgagtttcaccc 50251505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 396
Target Start/End: Original strand, 738 - 791
Alignment:
Q  343 accacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttca 396  Q
    ||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||    
T  738 accacacattgaaaatggatcccacataaagtggtgagacccacatgagtttca 791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 400
Target Start/End: Original strand, 47822052 - 47822109
Alignment:
Q  343 accacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcaccca 400  Q
    ||||||||||| ||||||||| ||||||||||||||||||||| ||| ||||||||||    
T  47822052 accacacattggaaatggatcccacataaagtggtgagatccacatgggtttcaccca 47822109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 400
Target Start/End: Complemental strand, 557483 - 557428
Alignment:
Q  345 cacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcaccca 400  Q
    |||||||| |||||||||| ||||||||||||||||| ||| ||||||||||||||    
T  557483 cacacattaaaaatggatcccacataaagtggtgagacccacatgagtttcaccca 557428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 345 - 400
Target Start/End: Original strand, 36738532 - 36738587
Alignment:
Q  345 cacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcaccca 400  Q
    ||||| ||| ||||||||| ||||||||||||||||| ||| ||||||||||||||    
T  36738532 cacacgttggaaatggatcccacataaagtggtgagacccacatgagtttcaccca 36738587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 355 - 400
Target Start/End: Complemental strand, 29310518 - 29310473
Alignment:
Q  355 aaatggatcgcacataaagtggtgagatccatatgagtttcaccca 400  Q
    ||||||||| ||||||||||||||||| ||| ||||||||||||||    
T  29310518 aaatggatcccacataaagtggtgagacccacatgagtttcaccca 29310473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 394
Target Start/End: Original strand, 39237733 - 39237784
Alignment:
Q  343 accacacattgaaaatggatcgcacataaagtggtgagatccatatgagttt 394  Q
    ||||||||||| ||||||||| || |||||||||||||| ||| ||||||||    
T  39237733 accacacattggaaatggatcccatataaagtggtgagacccacatgagttt 39237784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 398
Target Start/End: Original strand, 42815632 - 42815683
Alignment:
Q  347 cacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcacc 398  Q
    ||||||||||||||||  | ||||||||||||||| ||| ||||||||||||    
T  42815632 cacattgaaaatggattccccataaagtggtgagacccacatgagtttcacc 42815683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 398
Target Start/End: Complemental strand, 3399092 - 3399039
Alignment:
Q  345 cacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcacc 398  Q
    ||||||||||||||  |||  |||||||||||||||| ||| ||||||||||||    
T  3399092 cacacattgaaaataaatcttacataaagtggtgagacccacatgagtttcacc 3399039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 400
Target Start/End: Original strand, 25695964 - 25696009
Alignment:
Q  355 aaatggatcgcacataaagtggtgagatccatatgagtttcaccca 400  Q
    ||||||| | |||||||| |||||||||||| ||||||||||||||    
T  25695964 aaatggacctcacataaaatggtgagatccacatgagtttcaccca 25696009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 400
Target Start/End: Complemental strand, 46947869 - 46947813
Alignment:
Q  344 ccacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcaccca 400  Q
    |||||| ||||||||| ||| | ||||||||||||||| ||| ||| ||||||||||    
T  46947869 ccacactttgaaaatgcatcccgcataaagtggtgagacccacatgggtttcaccca 46947813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 398
Target Start/End: Complemental strand, 49160353 - 49160301
Alignment:
Q  346 acacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcacc 398  Q
    |||||||||||||||||| || |||||||| ||||| |||| ||| |||||||    
T  49160353 acacattgaaaatggatcccaaataaagtgttgagacccatgtgaatttcacc 49160301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 400
Target Start/End: Original strand, 19078984 - 19079041
Alignment:
Q  343 accacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcaccca 400  Q
    ||||||||||| ||||||||| ||||||||||||||||| ||| ||||||||||||||    
T  19078984 accacacattggaaatggatcccacataaagtggtgagacccacatgagtttcaccca 19079041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 400
Target Start/End: Original strand, 19126872 - 19126929
Alignment:
Q  343 accacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcaccca 400  Q
    ||||||||||| ||||||||| ||||||||||||||||| ||| ||||||||||||||    
T  19126872 accacacattggaaatggatcccacataaagtggtgagacccacatgagtttcaccca 19126929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 343 - 400
Target Start/End: Original strand, 24886110 - 24886167
Alignment:
Q  343 accacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcaccca 400  Q
    ||||||||||| |||| |||| ||||||||| ||||||| ||| ||||||||||||||    
T  24886110 accacacattgtaaatagatcccacataaagcggtgagacccacatgagtttcaccca 24886167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 381
Target Start/End: Original strand, 932052 - 932090
Alignment:
Q  343 accacacattgaaaatggatcgcacataaagtggtgaga 381  Q
    ||||||||||| ||||||||| |||||||||||||||||    
T  932052 accacacattggaaatggatcccacataaagtggtgaga 932090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 396
Target Start/End: Original strand, 29068151 - 29068204
Alignment:
Q  343 accacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttca 396  Q
    ||||||||||| |||| |||| |||||||| |||||||| ||| ||||||||||    
T  29068151 accacacattggaaattgatcccacataaaatggtgagacccacatgagtttca 29068204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 344 - 396
Target Start/End: Original strand, 6951771 - 6951823
Alignment:
Q  344 ccacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttca 396  Q
    |||||||||||||||||||| ||||||||||||||||| ||| ||||||||||    
T  6951771 ccacacattgaaaatggatcccacataaagtggtgagacccacatgagtttca 6951823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 343 - 400
Target Start/End: Complemental strand, 5140078 - 5140021
Alignment:
Q  343 accacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcaccca 400  Q
    ||||||||||||||||||||| ||||||||||||||| | ||  ||||||||||||||    
T  5140078 accacacattgaaaatggatcccacataaagtggtgaaacccgcatgagtttcaccca 5140021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 347 - 396
Target Start/End: Original strand, 8503850 - 8503899
Alignment:
Q  347 cacattgaaaatggatcgcacataaagtggtgagatccatatgagtttca 396  Q
    |||||| |||||| ||| ||||||||||||||||||||| ||||||||||    
T  8503850 cacattaaaaatgaatctcacataaagtggtgagatccacatgagtttca 8503899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 343 - 396
Target Start/End: Original strand, 42635380 - 42635433
Alignment:
Q  343 accacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttca 396  Q
    ||||||||||||||||||||  ||||||||||| ||||| ||| ||||||||||    
T  42635380 accacacattgaaaatggattccacataaagtgatgagacccacatgagtttca 42635433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 399
Target Start/End: Original strand, 7709818 - 7709874
Alignment:
Q  343 accacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcaccc 399  Q
    ||||||||||| |||| |||| ||||||||||||||||  ||| |||||||||||||    
T  7709818 accacacattggaaatagatcccacataaagtggtgagtcccacatgagtttcaccc 7709874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 400
Target Start/End: Complemental strand, 14960753 - 14960699
Alignment:
Q  346 acacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcaccca 400  Q
    |||||||||||||||||| |||||||| | ||||||   ||||||||||||||||    
T  14960753 acacattgaaaatggatctcacataaaatagtgagacttatatgagtttcaccca 14960699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 343 - 398
Target Start/End: Complemental strand, 33440612 - 33440557
Alignment:
Q  343 accacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcacc 398  Q
    ||||||||||| ||||||||| ||||||||||||||||| ||| ||||||||||||    
T  33440612 accacacattggaaatggatcccacataaagtggtgagacccacatgagtttcacc 33440557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 355 - 400
Target Start/End: Complemental strand, 30085474 - 30085429
Alignment:
Q  355 aaatggatcgcacataaagtggtgagatccatatgagtttcaccca 400  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||    
T  30085474 aaatggatcccacataaagtggtgagatccacatgagtttcaccca 30085429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 343 - 400
Target Start/End: Original strand, 6580902 - 6580958
Alignment:
Q  343 accacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcaccca 400  Q
    ||||||||||| ||||| ||| ||||||||||||||||| ||| ||||||||||||||    
T  6580902 accacacattggaaatg-atcccacataaagtggtgagacccacatgagtttcaccca 6580958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 399
Target Start/End: Original strand, 12212198 - 12212251
Alignment:
Q  346 acacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcaccc 399  Q
    |||| ||| |||||| || |||||||||||||||||||||||||| ||| ||||    
T  12212198 acactttggaaatgggtcccacataaagtggtgagatccatatgaattttaccc 12212251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 399
Target Start/End: Original strand, 12456626 - 12456679
Alignment:
Q  346 acacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcaccc 399  Q
    |||| ||| |||||| || |||||||||||||||||||||||||| ||| ||||    
T  12456626 acactttggaaatgggtcccacataaagtggtgagatccatatgaattttaccc 12456679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 400
Target Start/End: Original strand, 13639477 - 13639532
Alignment:
Q  345 cacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcaccca 400  Q
    ||||||||| ||||||||| ||||||||||||||||| ||| ||||||||||||||    
T  13639477 cacacattggaaatggatctcacataaagtggtgagacccacatgagtttcaccca 13639532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 350 - 400
Target Start/End: Complemental strand, 20909394 - 20909344
Alignment:
Q  350 attgaaaatggatcgcacataaagtggtgagatccatatgagtttcaccca 400  Q
    |||||||||||||| ||||||||||||||||| ||| ||||||||||||||    
T  20909394 attgaaaatggatcccacataaagtggtgagacccacatgagtttcaccca 20909344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 343 - 400
Target Start/End: Original strand, 38602881 - 38602938
Alignment:
Q  343 accacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcaccca 400  Q
    ||||||||||||||||||||| |||||||||| ||||||  || ||||||||||||||    
T  38602881 accacacattgaaaatggatcccacataaagtagtgagactcacatgagtttcaccca 38602938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 343 - 400
Target Start/End: Original strand, 29235720 - 29235777
Alignment:
Q  343 accacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcaccca 400  Q
    ||||||||||  |||||||||  ||||||||||||||||  |||||||||||||||||    
T  29235720 accacacattagaaatggatccaacataaagtggtgagactcatatgagtttcaccca 29235777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 343 - 400
Target Start/End: Complemental strand, 54187037 - 54186980
Alignment:
Q  343 accacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcaccca 400  Q
    ||||||||||  ||||||||| |||||||| ||||||||| || ||||||||||||||    
T  54187037 accacacattagaaatggatcccacataaaatggtgagattcacatgagtttcaccca 54186980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 396
Target Start/End: Complemental strand, 26223241 - 26223195
Alignment:
Q  350 attgaaaatggatcgcacataaagtggtgagatccatatgagtttca 396  Q
    |||||||||||||| ||||||||||| ||||||||| |||| |||||    
T  26223241 attgaaaatggatcccacataaagtgatgagatccacatgaatttca 26223195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 381
Target Start/End: Complemental strand, 46893452 - 46893416
Alignment:
Q  345 cacacattgaaaatggatcgcacataaagtggtgaga 381  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  46893452 cacacattggaaatggatcccacataaagtggtgaga 46893416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 345 - 400
Target Start/End: Complemental strand, 18237242 - 18237187
Alignment:
Q  345 cacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcaccca 400  Q
    |||||||||||||| |||| ||||||||||||||||| ||| |||| |||||||||    
T  18237242 cacacattgaaaatagatcccacataaagtggtgagacccacatgaatttcaccca 18237187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 343 - 400
Target Start/End: Original strand, 30892180 - 30892237
Alignment:
Q  343 accacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcaccca 400  Q
    ||||||||||  ||||||||| |||||||| ||||||||  |||||||||||||||||    
T  30892180 accacacattagaaatggatcccacataaaatggtgagactcatatgagtttcaccca 30892237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 398
Target Start/End: Complemental strand, 17190717 - 17190662
Alignment:
Q  343 accacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcacc 398  Q
    ||||||||||  ||||||||| ||||||||||||||||| ||| || |||||||||    
T  17190717 accacacattagaaatggatcccacataaagtggtgagacccacataagtttcacc 17190662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 396
Target Start/End: Original strand, 42958511 - 42958564
Alignment:
Q  343 accacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttca 396  Q
    ||||| ||||| ||||||||| ||||||||||||||||| ||  ||||||||||    
T  42958511 accacgcattggaaatggatcccacataaagtggtgagacccgcatgagtttca 42958564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 343 - 400
Target Start/End: Complemental strand, 7447674 - 7447617
Alignment:
Q  343 accacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcaccca 400  Q
    ||||||||||  ||||||||| ||||||||||||||||| ||| ||||| ||||||||    
T  7447674 accacacattagaaatggatcccacataaagtggtgagacccacatgagcttcaccca 7447617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University