View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21238_high_2 (Length: 570)

Name: NF21238_high_2
Description: NF21238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21238_high_2
NF21238_high_2
[»] chr1 (6 HSPs)
chr1 (1-260)||(17588052-17588318)
chr1 (296-555)||(17587747-17588015)
chr1 (296-373)||(17581465-17581542)
chr1 (104-157)||(25467877-25467930)
chr1 (218-255)||(17581584-17581621)
chr1 (104-149)||(22339627-22339672)
[»] chr5 (9 HSPs)
chr5 (296-393)||(28473715-28473812)
chr5 (298-393)||(32761237-32761332)
chr5 (296-393)||(32662883-32662980)
chr5 (296-392)||(32657259-32657355)
chr5 (296-368)||(32720640-32720712)
chr5 (299-350)||(25472877-25472928)
chr5 (104-138)||(30220581-30220615)
chr5 (104-149)||(23550578-23550623)
chr5 (296-368)||(32738403-32738475)
[»] chr8 (4 HSPs)
chr8 (104-149)||(32754888-32754933)
chr8 (104-149)||(43904217-43904262)
chr8 (104-139)||(22894202-22894237)
chr8 (104-149)||(42421072-42421117)
[»] chr7 (5 HSPs)
chr7 (297-394)||(7971674-7971771)
chr7 (296-370)||(37575288-37575362)
chr7 (104-149)||(28999479-28999524)
chr7 (104-149)||(35716556-35716601)
chr7 (104-138)||(34785303-34785337)
[»] chr2 (3 HSPs)
chr2 (104-138)||(43959634-43959668)
chr2 (104-138)||(22546936-22546970)
chr2 (104-138)||(45223966-45224000)
[»] chr6 (1 HSPs)
chr6 (104-138)||(14400421-14400455)
[»] chr3 (1 HSPs)
chr3 (104-149)||(3103355-3103400)


Alignment Details
Target: chr1 (Bit Score: 173; Significance: 9e-93; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 17588318 - 17588052
Alignment:
Q  1 tagcgcgcatatcgctatgaccgctatttcatagggagctgaatagagcttaatatgaccataaccgtgtattgt-------aactacacacagaaacag 93  Q
    |||| |||||| |||||||||||||||||||||| |||| ||| |||| || |||||| || ||| | | |||||       ||||||| ||||||||||    
T  17588318 tagcacgcatagcgctatgaccgctatttcatagagagcagaagagagttttatatgaacaaaacagaggattgtttgtacaaactacaaacagaaacag 17588219  T
Q  94 cgagcgcaggatggcttgttgcgtagcgctccagcaccgcaccgcggggccgctattgactactttaaaattaaaagtttgttctatgttgtgtaatttt 193  Q
     ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  17588218 agagagcaggatggcttgttgcgtagcgctccagcaccgcaccgcggggccgctattgactactttaaaattaaaagtttgttctatgttgtgttatttt 17588119  T
Q  194 gtttgtgttgttcgtctgcacttacattttagcatatcaaacacacccttaactcttctcagcgttc 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17588118 gtttgtgttgttcgtctgcacttacattttagcatatcaaacacacccttaactcttctcagagttc 17588052  T

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Target: chr1; HSP #2
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 296 - 555
Target Start/End: Complemental strand, 17588015 - 17587747
Alignment:
Q  296 tgcatacctgaaagatgggaatagttaagggttcaaaacatttgcagcaatcaagcaaattaggttcggaaatcatcagagactccattacacctttt-- 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||      
T  17588015 tgcatacctgaaagatgggaatagttaagggttcaaaacatttgcagcaatcaagcaaattaggttcggaaatcatcagagactccattaccccttttga 17587916  T
Q  394 ------gtgattnnnnnnnccattacaactttatcaaaatcaaattttttgactaaagcatagtcgagttgttctggt-nnnnnnnnntaacatctaaca 486  Q
          ||||||       || |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||          ||||||||||||    
T  17587915 ctaatagtgattaaaaaaacccttacaactttatcaaaatcaaattttttgattaaagcataatcgagttgttctggtaaaaaaaaaataacatctaaca 17587816  T
Q  487 aaacactcacatagaaattgaagactccggctgcttcaggttttgctctttgctcgtccgtggtcctat 555  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17587815 aaacactcacatagaaattgaagactccggctgcttcaggttttgctctttgctcgtccgtggtcctat 17587747  T

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Target: chr1; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 296 - 373
Target Start/End: Complemental strand, 17581542 - 17581465
Alignment:
Q  296 tgcatacctgaaagatgggaatagttaagggttcaaaacatttgcagcaatcaagcaaattaggttcggaaatcatca 373  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  17581542 tgcatacctgaaagatgggaatagttaagggttcaaaacatttgcagcaatcaagcaaataagggtcggaaatcatca 17581465  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 104 - 157
Target Start/End: Original strand, 25467877 - 25467930
Alignment:
Q  104 atggcttgttgcgtagcgctccagcaccgcaccgcggggccgctattgactact 157  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  25467877 atggcttgttgcgtagcgctccggcaccgcaccgcgtggccgctattgactact 25467930  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 218 - 255
Target Start/End: Complemental strand, 17581621 - 17581584
Alignment:
Q  218 cattttagcatatcaaacacacccttaactcttctcag 255  Q
    |||||||||||||||||||||||||||| |||||||||    
T  17581621 cattttagcatatcaaacacacccttaaatcttctcag 17581584  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 22339627 - 22339672
Alignment:
Q  104 atggcttgttgcgtagcgctccagcaccgcaccgcggggccgctat 149  Q
    |||||||||||||||||||||| ||||||||||| | |||||||||    
T  22339627 atggcttgttgcgtagcgctccggcaccgcaccgtgcggccgctat 22339672  T

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Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 296 - 393
Target Start/End: Complemental strand, 28473812 - 28473715
Alignment:
Q  296 tgcatacctgaaagatgggaatagttaagggttcaaaacatttgcagcaatcaagcaaattaggttcggaaatcatcagagactccattacacctttt 393  Q
    |||||||||||||||  |||||||||||||||| |||||||||||||||||||| ||||||||| | ||||||||| |||| |||||||||| |||||    
T  28473812 tgcatacctgaaagacaggaatagttaagggttgaaaacatttgcagcaatcaaacaaattagggttggaaatcattagaggctccattacaactttt 28473715  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 298 - 393
Target Start/End: Complemental strand, 32761332 - 32761237
Alignment:
Q  298 catacctgaaagatgggaatagttaagggttcaaaacatttgcagcaatcaagcaaattaggttcggaaatcatcagagactccattacacctttt 393  Q
    ||||||||||||| ||||||||| ||| ||| || ||||||| ||||||||||||| ||||| |   |||||||||||| ||||||||||||||||    
T  32761332 catacctgaaagacgggaatagtcaagcgttgaagacatttggagcaatcaagcaatttagggtttaaaatcatcagaggctccattacacctttt 32761237  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 296 - 393
Target Start/End: Original strand, 32662883 - 32662980
Alignment:
Q  296 tgcatacctgaaagatgggaatagttaagggttcaaaacatttgcagcaatcaagcaaattaggttcggaaatcatcagagactccattacacctttt 393  Q
    ||||||||||||||| ||||||||||||||| | | |||| ||||||||||||||||| || || | ||||  |||||||   |||||||||||||||    
T  32662883 tgcatacctgaaagacgggaatagttaagggctgagaacaattgcagcaatcaagcaattttgggttggaatacatcagatgatccattacacctttt 32662980  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 296 - 392
Target Start/End: Original strand, 32657259 - 32657355
Alignment:
Q  296 tgcatacctgaaagatgggaatagttaagggttcaaaacatttgcagcaatcaagcaaattaggttcggaaatcatcagagactccattacaccttt 392  Q
    ||||||||||  ||| |||||| |||||||||||  |||| ||||||||| |||||||||  ||  ||||||  |||| || |||||||||||||||    
T  32657259 tgcatacctgggagacgggaattgttaagggttcgcaacaattgcagcaaacaagcaaatctgggacggaaactatcacaggctccattacaccttt 32657355  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 296 - 368
Target Start/End: Complemental strand, 32720712 - 32720640
Alignment:
Q  296 tgcatacctgaaagatgggaatagttaagggttcaaaacatttgcagcaatcaagcaaattaggttcggaaat 368  Q
    ||||||||||||| | ||||||  ||||||||| | |||| ||||||||||||||||| ||||| | ||||||    
T  32720712 tgcatacctgaaaaacgggaatctttaagggttgataacaattgcagcaatcaagcaatttagggttggaaat 32720640  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 350
Target Start/End: Complemental strand, 25472928 - 25472877
Alignment:
Q  299 atacctgaaagatgggaatagttaagggttcaaaacatttgcagcaatcaag 350  Q
    ||||||||||||  |||||||||||| |||||||||| ||| ||||||||||    
T  25472928 atacctgaaagagtggaatagttaagagttcaaaacaattggagcaatcaag 25472877  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 104 - 138
Target Start/End: Complemental strand, 30220615 - 30220581
Alignment:
Q  104 atggcttgttgcgtagcgctccagcaccgcaccgc 138  Q
    |||||||||||||||||||||| ||||||||||||    
T  30220615 atggcttgttgcgtagcgctccggcaccgcaccgc 30220581  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 149
Target Start/End: Complemental strand, 23550623 - 23550578
Alignment:
Q  104 atggcttgttgcgtagcgctccagcaccgcaccgcggggccgctat 149  Q
    |||||||||||||||||||||| | ||||||||||| || ||||||    
T  23550623 atggcttgttgcgtagcgctccggtaccgcaccgcgcgggcgctat 23550578  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 368
Target Start/End: Complemental strand, 32738475 - 32738403
Alignment:
Q  296 tgcatacctgaaagatgggaatagttaagggttcaaaacatttgcagcaatcaagcaaattaggttcggaaat 368  Q
    ||||||||||||| | ||||||  ||||||||| | |||| |||||||| |||||||| ||||| | ||||||    
T  32738475 tgcatacctgaaaaacgggaatctttaagggttgataacaattgcagcactcaagcaatttagggttggaaat 32738403  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 32754888 - 32754933
Alignment:
Q  104 atggcttgttgcgtagcgctccagcaccgcaccgcggggccgctat 149  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||    
T  32754888 atggcttgttgcgtagcgctccggcaccgcaccgcgcggccgctat 32754933  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 104 - 149
Target Start/End: Complemental strand, 43904262 - 43904217
Alignment:
Q  104 atggcttgttgcgtagcgctccagcaccgcaccgcggggccgctat 149  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||    
T  43904262 atggcttgttgcgtagcgctccggcaccgcaccgcgcggccgctat 43904217  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 104 - 139
Target Start/End: Original strand, 22894202 - 22894237
Alignment:
Q  104 atggcttgttgcgtagcgctccagcaccgcaccgcg 139  Q
    ||||||||||||||||||||||||||||||||||||    
T  22894202 atggcttgttgcgtagcgctccagcaccgcaccgcg 22894237  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 104 - 149
Target Start/End: Complemental strand, 42421117 - 42421072
Alignment:
Q  104 atggcttgttgcgtagcgctccagcaccgcaccgcggggccgctat 149  Q
    ||||||||||||||| |||||| ||||||||||||| |||||||||    
T  42421117 atggcttgttgcgtaccgctccggcaccgcaccgcgcggccgctat 42421072  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 297 - 394
Target Start/End: Original strand, 7971674 - 7971771
Alignment:
Q  297 gcatacctgaaagatgggaatagttaagggttcaaaacatttgcagcaatcaagcaaattaggttcggaaatcatcagagactccattacaccttttg 394  Q
    ||||||||||||||  |||||| |||  |||| |||||| ||||||||||||||||| ||||  |  |||||| |||||| ||||||| |||||||||    
T  7971674 gcatacctgaaagacaggaatacttagaggttgaaaacaattgcagcaatcaagcaatttagagtttgaaatcgtcagaggctccattgcaccttttg 7971771  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 370
Target Start/End: Complemental strand, 37575362 - 37575288
Alignment:
Q  296 tgcatacctgaaagatgggaatagttaagggttcaaaacatttgcagcaatcaagcaaattaggttcggaaatca 370  Q
    ||||||||||||||| |||||| |||||||||| ||||||  || ||||||||||||  ||||| | ||||||||    
T  37575362 tgcatacctgaaagacgggaatggttaagggttgaaaacaaatgtagcaatcaagcactttagggttggaaatca 37575288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 28999479 - 28999524
Alignment:
Q  104 atggcttgttgcgtagcgctccagcaccgcaccgcggggccgctat 149  Q
    |||||||||||||||||||||| ||||||||||||  |||||||||    
T  28999479 atggcttgttgcgtagcgctccggcaccgcaccgcacggccgctat 28999524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 35716556 - 35716601
Alignment:
Q  104 atggcttgttgcgtagcgctccagcaccgcaccgcggggccgctat 149  Q
    |||||||||||||||| || |||||||||||||||| |||||||||    
T  35716556 atggcttgttgcgtagtgcgccagcaccgcaccgcgcggccgctat 35716601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 104 - 138
Target Start/End: Complemental strand, 34785337 - 34785303
Alignment:
Q  104 atggcttgttgcgtagcgctccagcaccgcaccgc 138  Q
    |||||||||||||||||||||| ||||||||||||    
T  34785337 atggcttgttgcgtagcgctccggcaccgcaccgc 34785303  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 138
Target Start/End: Original strand, 43959634 - 43959668
Alignment:
Q  104 atggcttgttgcgtagcgctccagcaccgcaccgc 138  Q
    |||||||||||||||||||||||||||||||||||    
T  43959634 atggcttgttgcgtagcgctccagcaccgcaccgc 43959668  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 104 - 138
Target Start/End: Original strand, 22546936 - 22546970
Alignment:
Q  104 atggcttgttgcgtagcgctccagcaccgcaccgc 138  Q
    |||||||||||||||||||||| ||||||||||||    
T  22546936 atggcttgttgcgtagcgctccggcaccgcaccgc 22546970  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 104 - 138
Target Start/End: Complemental strand, 45224000 - 45223966
Alignment:
Q  104 atggcttgttgcgtagcgctccagcaccgcaccgc 138  Q
    |||||||||||||||||||||| ||||||||||||    
T  45224000 atggcttgttgcgtagcgctccggcaccgcaccgc 45223966  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 104 - 138
Target Start/End: Complemental strand, 14400455 - 14400421
Alignment:
Q  104 atggcttgttgcgtagcgctccagcaccgcaccgc 138  Q
    |||||||||||||||||||||| ||||||||||||    
T  14400455 atggcttgttgcgtagcgctccggcaccgcaccgc 14400421  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 3103355 - 3103400
Alignment:
Q  104 atggcttgttgcgtagcgctccagcaccgcaccgcggggccgctat 149  Q
    |||||||||||||||||||||  ||||||||||| | |||||||||    
T  3103355 atggcttgttgcgtagcgctctggcaccgcaccgtgcggccgctat 3103400  T

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