View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21238_high_6 (Length: 336)
Name: NF21238_high_6
Description: NF21238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21238_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 15 - 331
Target Start/End: Complemental strand, 40667997 - 40667671
Alignment:
| Q |
15 |
agataacacccaaatccttctatacttatctaccggaatcaactaaaagaaaacgctttcgaagatatctgcaaggtgtatagattaggggtaaaaacga |
114 |
Q |
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| T |
40667997 |
agataacacccaaatccttctatacttatctaccggaatcaactaaaagaaaacgctttggaagatatctgcaaggtgtatagattaggggtaaaaacga |
40667898 |
T |
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| Q |
115 |
aaatttaggagacttaaaaacattaagaggcctaaaatgaaagcttcttagaataaagacattttcaatcaatgaaatgagcaacaagttatagctgtta |
214 |
Q |
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|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40667897 |
aaatataggagacttaaaaacattaagaggcctaaaaagaaagcttcttagaataaagacattttcaatcaatgaaatgagcaacaagttatagctgtta |
40667798 |
T |
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| Q |
215 |
gcgtaacaaactctatccctcttg--------------atttttatgcatattcatatatttcacaacttgatcatgtgacctgtctgtctctttgtgga |
300 |
Q |
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| T |
40667797 |
gcgtaacaaactctatccctcttgattgctaagatattatttttatgcatattcatatatttcacaacttgatcatgtgac----ctgtctctttgtgga |
40667702 |
T |
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| Q |
301 |
atatgctatttaaggatccctcgtctctgct |
331 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
40667701 |
atatgctatttaaggatccctcgtctctgct |
40667671 |
T |
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