View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21238_high_8 (Length: 218)
Name: NF21238_high_8
Description: NF21238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21238_high_8 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 32158273 - 32158490
Alignment:
| Q |
1 |
caataagaccaatcgtttttggcaaaatattatgtcccagtggggtataagtcacattcttaacagacccaaaattcatcacctaaatcattaatacaat |
100 |
Q |
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| T |
32158273 |
caataagaacaatcgtttttggtaaaatattatgtcccggtggggtataagtcacattcttaacagaaccaaaattcgtcacctaaatcattaatacaat |
32158372 |
T |
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| Q |
101 |
taaatctatctaaactagattcatgtatatcaaattcttctaaatcattattatggtttgaatgaaaaccaaacaagaatcataattttgtaagaaataa |
200 |
Q |
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| T |
32158373 |
taaatctatctaaactagattcatgtatatcaaattcttctaaatcattattatggtttgaatgaaaatcaaacaagaatcataattttgtaagaaataa |
32158472 |
T |
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| Q |
201 |
aatcgaacatgaatcata |
218 |
Q |
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| T |
32158473 |
aatcgaacatgaatcata |
32158490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 2821157 - 2821004
Alignment:
| Q |
1 |
caataagaccaatcgtttttggcaaaatattatgtcccagtg--gggtataagtcacattcttaaca---gacccaaaattcatcacctaaatcattaat |
95 |
Q |
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| T |
2821157 |
caataagaccaatcgtttttggcaaaatattatgcccccgtgtggggtataagtctcattcttaacaacagaaccaaaattcgtcagctaaatcatccat |
2821058 |
T |
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| Q |
96 |
acaattaaatctatctaaactagattcatgtatatcaaattcttctaaatcatt |
149 |
Q |
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| T |
2821057 |
acaattatatatatctaaactagattcatgtatatcaaattattctaaatcatt |
2821004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 2820975 - 2820911
Alignment:
| Q |
154 |
tggtttgaatgaaaaccaaacaagaatcataattttgtaagaaataaaatcgaacatgaatcata |
218 |
Q |
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| T |
2820975 |
tggtatgaaagaaaatcaaacaagattcgtaattttgtaagagagaaaatcaaacatgaatcata |
2820911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 149
Target Start/End: Original strand, 32110990 - 32111039
Alignment:
| Q |
99 |
attaaatctatctaaactagattcatgtatatcaaattcttctaaatcatt |
149 |
Q |
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| T |
32110990 |
attaaatatatctaa-ctagattcatgtatgtcaaattcttccaaatcatt |
32111039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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