View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21238_low_3 (Length: 462)
Name: NF21238_low_3
Description: NF21238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21238_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Complemental strand, 35068791 - 35068346
Alignment:
| Q |
1 |
agtgatatgaaaaatactgctcagctacaaatacttgtttttctcatttgaattaccatttttcttgaccaccatttcccttgtatgtttatattttaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35068791 |
agtgatatgaaaaatactgctcagctacaaatacttgtttttctcatttgaattaccatttttcttgaccaccatttcccttgtatgtttatattttaat |
35068692 |
T |
|
| Q |
101 |
ttttaagtgttattcttcaaatatacactgctaggagatagacttacctgtccaaatcctgttttattaaatatgttgtaccatcaaaacacaccaaaat |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35068691 |
ttttaagtgttactcttcaaatatacactgctaggagatagacttacctgtccaaatcctgttttattaaatatgttgtaccatcaaaacacaccaaaat |
35068592 |
T |
|
| Q |
201 |
gattcaaatgggttatctttttcaatttgatttttcttattccttgtcacagcttgctgcctttgtacttcactatactcaccttattaggacaagatca |
300 |
Q |
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| T |
35068591 |
gattcaaatgggttatctttttcaatttgatttttcttattccttgtcacaacttgctgcctttgtacttcactatactcaccttattaggacaagatca |
35068492 |
T |
|
| Q |
301 |
aaactcacannnnnnncattgctaaataagtttattaagtcataatagtttcataatttggtaatgaagacttagttaaggttttttaactgnnnnnnng |
400 |
Q |
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| T |
35068491 |
aaactcacatttttttcattgctaaataagtttattaagtcataatagtttcataatttggtaatgaagacttagttaaggttttttaactgtttttttg |
35068392 |
T |
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| Q |
401 |
tattgaattgaattatgaacnnnnnnntatgattgaaagtgatgcc |
446 |
Q |
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| T |
35068391 |
tattgatttgaattatgaacaaaaaaatatgattgaaagtgatgcc |
35068346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 2 - 346
Target Start/End: Complemental strand, 35052871 - 35052527
Alignment:
| Q |
2 |
gtgatatgaaaaatactgctcagctacaaatacttgtttttctcatttgaattaccatttttcttgaccaccatttcccttgtatgtttatattttaatt |
101 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35052871 |
gtgatatgaaaaatactgctcagctacaaatgcttgtttttctcatttgaattaccatttttcttgaccaccatttcccttgtatgtttatattttaatt |
35052772 |
T |
|
| Q |
102 |
tttaagtgttattcttcaaatatacactgctaggagatagacttacctgtccaaatcctgttttattaaatatgttgtaccatcaaaacacaccaaaatg |
201 |
Q |
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||||||||||| ||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35052771 |
tttaagtgttactcttcaaatatacaccgctatgagatagacttacctgtctaaatcctgttttattaaatatgttgtaccatcaaaacacaccaaaatg |
35052672 |
T |
|
| Q |
202 |
attcaaatgggttatctttttcaatttgatttttcttattccttgtcacagcttgctgcctttgtacttcactatactcaccttattaggacaagatcaa |
301 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
35052671 |
attcaaataggttatctttttcaatttgatttttcttattctttgtcacaccttgctgcctttgtacttcactatactcaccttatttggacaagatcaa |
35052572 |
T |
|
| Q |
302 |
aactcacannnnnnncattgctaaataagtttattaagtcataat |
346 |
Q |
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|||||||| |||||||||||||||||||||||||||||| |
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| T |
35052571 |
aactcacattttttgcattgctaaataagtttattaagtcataat |
35052527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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