View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21238_low_5 (Length: 365)
Name: NF21238_low_5
Description: NF21238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21238_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 17 - 336
Target Start/End: Original strand, 15186091 - 15186410
Alignment:
| Q |
17 |
gaagacaacatagctttcaaaggaacttgtttatgtcacattaaatctgataatgttgactgaacaagttggtttgctatagtcaacaaatgatagacac |
116 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15186091 |
gaagacaacataactttcaaaggaacttgtttatgtcacattaaatctgataatgttgactgaacaagttggtttgctatagtcaacaaatgatagacac |
15186190 |
T |
|
| Q |
117 |
cacaaatagtataacctttagaaggatctaaatgttatttccacgtatccaccacatcatgctgcaaaacaacatcaagaagtaaaacacaacactcgct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15186191 |
cacaaatagtataacctttagaaggatctaaatgttatttccacgtatccaccacatcatgctgcaaaacaacatcaagaagtaaaacacaacactcgct |
15186290 |
T |
|
| Q |
217 |
taatatatcctcctcccatataaacaacctctgtcgccatttccaagccattccccctcaccccaaatctaacactagaaatcgagtcccaactgaccca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15186291 |
taatatatcctcctcccatataaacaacctctgtcgccatttccaagccattccccctcaccccaaatctaacactagaaatcgagtcccaactgaccca |
15186390 |
T |
|
| Q |
317 |
agaaattttcccaaacaaat |
336 |
Q |
| |
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| |||||||||||||||||| |
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| T |
15186391 |
ataaattttcccaaacaaat |
15186410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 30 - 244
Target Start/End: Original strand, 33217591 - 33217805
Alignment:
| Q |
30 |
ctttcaaaggaacttgtttatgtcacattaaatctgataatgttgactgaacaagttggtttgctatagtcaacaaatgatagacaccacaaatagtata |
129 |
Q |
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||||||||||||||||||||||| |||||||||| ||||||||||| | | ||||||||| | | |||| |||||||||||||||||||| | |||| |
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| T |
33217591 |
ctttcaaaggaacttgtttatgtgacattaaatcagataatgttgaatcaccaagttggtcctccgttgtcagcaaatgatagacaccacaaacaatata |
33217690 |
T |
|
| Q |
130 |
acctttagaaggatctaaatgttatttccacgtatccaccacatcatgctgcaaaacaacatcaagaagtaaaacacaacactcgcttaatatatcctcc |
229 |
Q |
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|| ||| |||||||||| || ||||||| ||||||||||||||| ||| ||||||||||||||||| | | ||||||||| | |||||| | |||| |
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| T |
33217691 |
acgttttgaaggatctatataccatttccatgtatccaccacatcaacctgtaaaacaacatcaagaaggatatcacaacactaccataatattttctcc |
33217790 |
T |
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| Q |
230 |
tcccatataaacaac |
244 |
Q |
| |
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|||||| ||||||| |
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| T |
33217791 |
tcccatgcaaacaac |
33217805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 96 - 210
Target Start/End: Original strand, 9409178 - 9409292
Alignment:
| Q |
96 |
tagtcaacaaatgatagacaccacaaatagtataacctttagaaggatctaaatgttatttccacgtatccaccacatcatgctgcaaaacaacatcaag |
195 |
Q |
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|||||||||||||||||||||| |||| ||||||||| |||||||||||||||| ||| ||||||||||||||| ||| |||||||||||||||||| |
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| T |
9409178 |
tagtcaacaaatgatagacaccgcaaacagtataacccttagaaggatctaaataccattcccacgtatccaccacgtcaacctgcaaaacaacatcaag |
9409277 |
T |
|
| Q |
196 |
aagtaaaacacaaca |
210 |
Q |
| |
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||| |||||| |||| |
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|
| T |
9409278 |
aagcaaaacataaca |
9409292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 30 - 213
Target Start/End: Complemental strand, 26385876 - 26385693
Alignment:
| Q |
30 |
ctttcaaaggaacttgtttatgtcacattaaatctgataatgttgactgaacaagttggtttgctatagtcaacaaatgatagacaccacaaatagtata |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||| ||| |||||| |||| | | |||||||||||| ||||| || |||||||| |
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| T |
26385876 |
ctttcaaaggaacttgtttatgtcacattaaatttgttaacactgagtgaacaggttgatccaccgtagtcaacaaattatagatgccgtgcatagtata |
26385777 |
T |
|
| Q |
130 |
acctttagaaggatctaaatgttatttccacgtatccaccacatcatgctgcaaaacaacatcaagaagtaaaacacaacactc |
213 |
Q |
| |
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|| ||||| |||||||| |||| ||||||| ||||||||||||||| || ||||||||||||||||| ||| |||||||||| |
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| T |
26385776 |
acttttaggaggatctacatgtcatttccaagtatccaccacatcaacctacaaaacaacatcaagaaacaaagcacaacactc |
26385693 |
T |
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