View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21238_low_6 (Length: 356)

Name: NF21238_low_6
Description: NF21238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21238_low_6
NF21238_low_6
[»] scaffold0191 (2 HSPs)
scaffold0191 (73-340)||(5459-5726)
scaffold0191 (15-69)||(18923-18977)
[»] chr4 (4 HSPs)
chr4 (73-340)||(28475164-28475432)
chr4 (220-300)||(24182813-24182893)
chr4 (73-136)||(24183139-24183202)
chr4 (158-191)||(50158510-50158543)
[»] chr8 (7 HSPs)
chr8 (202-300)||(15277132-15277230)
chr8 (202-300)||(15457501-15457599)
chr8 (202-300)||(15631122-15631220)
chr8 (73-136)||(15630833-15630896)
chr8 (73-136)||(43217285-43217348)
chr8 (77-136)||(15277455-15277514)
chr8 (77-136)||(15457824-15457883)
[»] chr3 (4 HSPs)
chr3 (202-300)||(9262440-9262538)
chr3 (202-300)||(6436516-6436614)
chr3 (73-136)||(6436224-6436287)
chr3 (77-136)||(9262156-9262215)
[»] chr2 (5 HSPs)
chr2 (202-300)||(14869420-14869518)
chr2 (202-300)||(14872392-14872490)
chr2 (73-136)||(14869133-14869196)
chr2 (73-136)||(45658789-45658852)
chr2 (158-191)||(3395104-3395137)
[»] chr1 (2 HSPs)
chr1 (220-299)||(16852579-16852658)
chr1 (73-136)||(16852272-16852335)
[»] chr7 (4 HSPs)
chr7 (202-300)||(6188464-6188562)
chr7 (202-300)||(6194980-6195078)
chr7 (73-136)||(6188176-6188239)
chr7 (73-136)||(6194692-6194755)


Alignment Details
Target: scaffold0191 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 73 - 340
Target Start/End: Original strand, 5459 - 5726
Alignment:
Q  73 gttatatctgattcattcacttttgatctttggtaagatctgacaatactaaaatgtagatgtgttccagtgagataaaaaatacatacatgtttattag 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  5459 gttatatctgattcattcacttttgatctttggtaagatctgacaataataaaatgtagatgtgttctagtgagataaaaaagacatacatgtttattag 5558  T
Q  173 acattttaaattgttgtgatannnnnnnnaatgagtctgctattttggtaaaataattatacattaattcttatctccttcaataaatgtataaaattac 272  Q
    ||||||||||||||||| |||        |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5559 acattttaaattgttgtaatattttttttaatgagtctgatattttggtaaaataattatacattaattcttatctccttcaataaatgtataaaattac 5658  T
Q  273 cagtaactcgttatatactttatactcttagnnnnnnncaatcactccttacttgtttcccttttcat 340  Q
    |||||||||||||||||||||||||||||||       ||||||||||||| ||||||||||||||||    
T  5659 cagtaactcgttatatactttatactcttagaaaaaaacaatcactccttagttgtttcccttttcat 5726  T

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Target: scaffold0191; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 18977 - 18923
Alignment:
Q  15 tcaatatcattatttttaccataaacaagatggaataggcatctaaaatacacaa 69  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18977 tcaatatcattatttttaccataaacaagatggaataggcatctaaaatacacaa 18923  T

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Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 73 - 340
Target Start/End: Complemental strand, 28475432 - 28475164
Alignment:
Q  73 gttatatctgattcattcacttttgatctttggtaagatctgacaatactaaaatgtagatgtgttccagtgagataaaaaatacatacatgtttattag 172  Q
    ||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  28475432 gttatatttggttcattcacttttgatctttggtaagatctgacagtactaaaatgtagatgtgttctggtgagataaaaaatacatacatgtttattag 28475333  T
Q  173 acattttaaattgttgtgatannnnnnnn-aatgagtctgctattttggtaaaataattatacattaattcttatctccttcaataaatgtataaaatta 271  Q
    ||||||||||| || ||||||         ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28475332 acattttaaatagtcgtgatatttttttttaatgaatctgatattttggtaaaataattatacattaattcttatctccttcaataaatgtataaaatta 28475233  T
Q  272 ccagtaactcgttatatactttatactcttagnnnnnnncaatcactccttacttgtttcccttttcat 340  Q
    ||||||||| ||||||||||||||||||||||       ||||||||||| ||||||||||||||||||    
T  28475232 ccagtaacttgttatatactttatactcttagagaaaaacaatcactcctgacttgtttcccttttcat 28475164  T

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Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 220 - 300
Target Start/End: Complemental strand, 24182893 - 24182813
Alignment:
Q  220 gtaaaataattatacattaattcttatctccttcaataaatgtataaaattaccagtaactcgttatatactttatactct 300  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  24182893 gtaaaataattatccattaattcttaactccttcaataaatgtataaaatcatcagtaactcgttatatactttatactct 24182813  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 136
Target Start/End: Complemental strand, 24183202 - 24183139
Alignment:
Q  73 gttatatctgattcattcacttttgatctttggtaagatctgacaatactaaaatgtagatgtg 136  Q
    |||||||| ||||||||||||||||||||| | | |||||| ||||||  ||||||||||||||    
T  24183202 gttatatccgattcattcacttttgatcttcgatgagatcttacaatagaaaaatgtagatgtg 24183139  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 191
Target Start/End: Original strand, 50158510 - 50158543
Alignment:
Q  158 atacatgtttattagacattttaaattgttgtga 191  Q
    |||||||||||||||||||||||||||| |||||    
T  50158510 atacatgtttattagacattttaaattgatgtga 50158543  T

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Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 202 - 300
Target Start/End: Complemental strand, 15277230 - 15277132
Alignment:
Q  202 aatgagtctgctattttggtaaaataattatacattaattcttatctccttcaataaatgtataaaattaccagtaactcgttatatactttatactct 300  Q
    |||||||||  | |||| ||||||||||||  |||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  15277230 aatgagtctaatcttttagtaaaataattactcattaattcttaactccttcaataaatgtataaaattattagtaactcgttatatactttatactct 15277132  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 202 - 300
Target Start/End: Complemental strand, 15457599 - 15457501
Alignment:
Q  202 aatgagtctgctattttggtaaaataattatacattaattcttatctccttcaataaatgtataaaattaccagtaactcgttatatactttatactct 300  Q
    |||||||||  | |||| ||||||||||||  |||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  15457599 aatgagtctaatcttttagtaaaataattactcattaattcttaactccttcaataaatgtataaaattattagtaactcgttatatactttatactct 15457501  T

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Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 202 - 300
Target Start/End: Original strand, 15631122 - 15631220
Alignment:
Q  202 aatgagtctgctattttggtaaaataattatacattaattcttatctccttcaataaatgtataaaattaccagtaactcgttatatactttatactct 300  Q
    |||||||||  |||||| ||||||||||||  |||||||||||| ||||||||||||||||||||||||| | |||||||||| |||||||||||||||    
T  15631122 aatgagtctaatattttagtaaaataattacccattaattcttaactccttcaataaatgtataaaattatcggtaactcgttgtatactttatactct 15631220  T

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Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 73 - 136
Target Start/End: Original strand, 15630833 - 15630896
Alignment:
Q  73 gttatatctgattcattcacttttgatctttggtaagatctgacaatactaaaatgtagatgtg 136  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||  ||||||||||||||    
T  15630833 gttatatctgattcattcacttttgatctttggtgagatcttacaatagaaaaatgtagatgtg 15630896  T

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Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 73 - 136
Target Start/End: Complemental strand, 43217348 - 43217285
Alignment:
Q  73 gttatatctgattcattcacttttgatctttggtaagatctgacaatactaaaatgtagatgtg 136  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||  ||||||||||||||    
T  43217348 gttatatctgattcattcacttttgatctttggtgagatcttacaatagaaaaatgtagatgtg 43217285  T

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Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 136
Target Start/End: Complemental strand, 15277514 - 15277455
Alignment:
Q  77 tatctgattcattcacttttgatctttggtaagatctgacaatactaaaatgtagatgtg 136  Q
    |||||||||||||||||||||||||||| | |||||| ||||||  |||||| |||||||    
T  15277514 tatctgattcattcacttttgatctttgatgagatcttacaatagaaaaatggagatgtg 15277455  T

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Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 136
Target Start/End: Complemental strand, 15457883 - 15457824
Alignment:
Q  77 tatctgattcattcacttttgatctttggtaagatctgacaatactaaaatgtagatgtg 136  Q
    |||||||||||||||||||||||||||| | |||||| ||||||  |||||| |||||||    
T  15457883 tatctgattcattcacttttgatctttgatgagatcttacaatagaaaaatggagatgtg 15457824  T

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Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 202 - 300
Target Start/End: Original strand, 9262440 - 9262538
Alignment:
Q  202 aatgagtctgctattttggtaaaataattatacattaattcttatctccttcaataaatgtataaaattaccagtaactcgttatatactttatactct 300  Q
    |||||||||  |||||| ||||||||||||  |||||||||||| |||||||||||||||||| |||||| || ||||||||| |||||||||||||||    
T  9262440 aatgagtctaatattttagtaaaataattacccattaattcttaactccttcaataaatgtatcaaattatcattaactcgttgtatactttatactct 9262538  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 202 - 300
Target Start/End: Original strand, 6436516 - 6436614
Alignment:
Q  202 aatgagtctgctattttggtaaaataattatacattaattcttatctccttcaataaatgtataaaattaccagtaactcgttatatactttatactct 300  Q
    |||||||||  |||||| ||||||||||||  |||||||||||| ||||||||||||||||||||||  | | |||||||||| |||||||||||||||    
T  6436516 aatgagtctaatattttagtaaaataattacccattaattcttaactccttcaataaatgtataaaagcatcggtaactcgttgtatactttatactct 6436614  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 73 - 136
Target Start/End: Original strand, 6436224 - 6436287
Alignment:
Q  73 gttatatctgattcattcacttttgatctttggtaagatctgacaatactaaaatgtagatgtg 136  Q
    ||||||||| |||||||||||||||||||||||| |||||| ||||||  ||||||||||||||    
T  6436224 gttatatctaattcattcacttttgatctttggtgagatcttacaatagaaaaatgtagatgtg 6436287  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 77 - 136
Target Start/End: Original strand, 9262156 - 9262215
Alignment:
Q  77 tatctgattcattcacttttgatctttggtaagatctgacaatactaaaatgtagatgtg 136  Q
    |||||||||||||||||||||||||||||| |||||| ||||||  ||||||||||||||    
T  9262156 tatctgattcattcacttttgatctttggtgagatcttacaatagaaaaatgtagatgtg 9262215  T

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Target: chr2 (Bit Score: 59; Significance: 6e-25; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 202 - 300
Target Start/End: Original strand, 14869420 - 14869518
Alignment:
Q  202 aatgagtctgctattttggtaaaataattatacattaattcttatctccttcaataaatgtataaaattaccagtaactcgttatatactttatactct 300  Q
    |||||||||  |||||| ||||||||||||   ||||||||||| ||||||||||||||||||||||||| | |||||||||| |||||||||||||||    
T  14869420 aatgagtctaatattttagtaaaataattaccaattaattcttaactccttcaataaatgtataaaattatcggtaactcgttgtatactttatactct 14869518  T

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Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 202 - 300
Target Start/End: Original strand, 14872392 - 14872490
Alignment:
Q  202 aatgagtctgctattttggtaaaataattatacattaattcttatctccttcaataaatgtataaaattaccagtaactcgttatatactttatactct 300  Q
    |||||||||  |||||| ||||||||||||   ||||||||||| ||||||||||||||||||||||||| | |||||||||| |||||||||||||||    
T  14872392 aatgagtctaatattttagtaaaataattaccaattaattcttaactccttcaataaatgtataaaattatcggtaactcgttgtatactttatactct 14872490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 73 - 136
Target Start/End: Original strand, 14869133 - 14869196
Alignment:
Q  73 gttatatctgattcattcacttttgatctttggtaagatctgacaatactaaaatgtagatgtg 136  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||  ||||||||||||||    
T  14869133 gttatatctgattcattcacttttgatctttggtgagatcttacaatagaaaaatgtagatgtg 14869196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 136
Target Start/End: Original strand, 45658789 - 45658852
Alignment:
Q  73 gttatatctgattcattcacttttgatctttggtaagatctgacaatactaaaatgtagatgtg 136  Q
    ||||||||||||||||||| |||| ||||||||| |||||| ||||||  ||||||||||||||    
T  45658789 gttatatctgattcattcattttttatctttggtgagatcttacaatagaaaaatgtagatgtg 45658852  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 191
Target Start/End: Complemental strand, 3395137 - 3395104
Alignment:
Q  158 atacatgtttattagacattttaaattgttgtga 191  Q
    |||||||||||||||||||||||||||| |||||    
T  3395137 atacatgtttattagacattttaaattgatgtga 3395104  T

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Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 220 - 299
Target Start/End: Original strand, 16852579 - 16852658
Alignment:
Q  220 gtaaaataattatacattaattcttatctccttcaataaatgtataaaattaccagtaactcgttatatactttatactc 299  Q
    ||||||||||||  |||||||||||| ||| ||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  16852579 gtaaaataattacccattaattcttaactctttcaataaatgtataaaattatcagtaactcgttgtatactttatactc 16852658  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 73 - 136
Target Start/End: Original strand, 16852272 - 16852335
Alignment:
Q  73 gttatatctgattcattcacttttgatctttggtaagatctgacaatactaaaatgtagatgtg 136  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||  ||||||||||||||    
T  16852272 gttatatctgattcattcacttttgatctttggtgagatcttacaatagaaaaatgtagatgtg 16852335  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 202 - 300
Target Start/End: Original strand, 6188464 - 6188562
Alignment:
Q  202 aatgagtctgctattttggtaaaataattatacattaattcttatctccttcaataaatgtataaaattaccagtaactcgttatatactttatactct 300  Q
    |||||||||  ||||||  ||||| |||||  |||||||||||| ||||||||||||||||||||||||| |||||||||| | |||||||||||||||    
T  6188464 aatgagtctaatattttaataaaaaaattacccattaattcttaactccttcaataaatgtataaaattatcagtaactcgctgtatactttatactct 6188562  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 202 - 300
Target Start/End: Original strand, 6194980 - 6195078
Alignment:
Q  202 aatgagtctgctattttggtaaaataattatacattaattcttatctccttcaataaatgtataaaattaccagtaactcgttatatactttatactct 300  Q
    |||||||||  ||||||  ||||| |||||  |||||||||||| ||||||||||||||||||||||||| |||||||||| | |||||||||||||||    
T  6194980 aatgagtctaatattttaataaaaaaattacccattaattcttaactccttcaataaatgtataaaattatcagtaactcgctgtatactttatactct 6195078  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 73 - 136
Target Start/End: Original strand, 6188176 - 6188239
Alignment:
Q  73 gttatatctgattcattcacttttgatctttggtaagatctgacaatactaaaatgtagatgtg 136  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||  ||||| ||||||||    
T  6188176 gttatatctgattcattcacttttgatctttggtgagatcttacaatagaaaaatatagatgtg 6188239  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 73 - 136
Target Start/End: Original strand, 6194692 - 6194755
Alignment:
Q  73 gttatatctgattcattcacttttgatctttggtaagatctgacaatactaaaatgtagatgtg 136  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||  ||||| ||||||||    
T  6194692 gttatatctgattcattcacttttgatctttggtgagatcttacaatagaaaaatatagatgtg 6194755  T

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