View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21238_low_8 (Length: 240)
Name: NF21238_low_8
Description: NF21238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21238_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 32158135 - 32157914
Alignment:
| Q |
1 |
tccatgatgtctatccagaacatggagattctttgagattcaactcacctaaacttttaaatatataatgaaattactgcaaggttgcatctatgccgag |
100 |
Q |
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| T |
32158135 |
tccatgatgtctatccagaacatggagactctttgagatccaactcacctaaacttttatatatatgatgaaattactgcaaggttgcatctatgccgag |
32158036 |
T |
|
| Q |
101 |
agaccacttgaatgcaattctatgatattattttgttcatgtcaaatatttgttagaaactagttataataataacattattttaaactaatgtttgtga |
200 |
Q |
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|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32158035 |
agaccacttgaatgtaattgtatgatattattttgttcatgtcaaatatttgttagaaactagttataataataacataattttaaactaatgtttgtga |
32157936 |
T |
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| Q |
201 |
taatttttctacagatgacact |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
32157935 |
taatttttctacagatgacact |
32157914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 140 - 222
Target Start/End: Complemental strand, 32110703 - 32110620
Alignment:
| Q |
140 |
tgtcaaatatttgttagaaactagttataataataacattattttaaactaatgtttg-tgataatttttctacagatgacact |
222 |
Q |
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|||||| ||||| | ||||| |||||||||| || ||||||||||||||||||||||| ||||| |||||| |||||||||||| |
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| T |
32110703 |
tgtcaactatttttcagaaaatagttataatgatgacattattttaaactaatgtttgttgatactttttcaacagatgacact |
32110620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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