View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21239_high_13 (Length: 431)
Name: NF21239_high_13
Description: NF21239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21239_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 9 - 384
Target Start/End: Complemental strand, 7560257 - 7559880
Alignment:
| Q |
9 |
agcagagataaaaagtaaacactatcaattcagtagttttaacaatatactaaacactgcatccgacggagtaaacaaattcaaatatagttcaagacat |
108 |
Q |
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| T |
7560257 |
agcagagataaaaagtaaacactatcaattcagtagttttaacaatatagtaaacactgcatccgacggagtaaacaaattcaaatatatttcaagacat |
7560158 |
T |
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| Q |
109 |
ctgttttgaagaatgtaaggttttcag---ctctctcaaatttcagcaagtgttcatatttccgattacctgcagtggtcagacatataaatcaaatgaa |
205 |
Q |
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| T |
7560157 |
ctgttttgaagaatgtaaggttttcagaagctctctcaaatttcagcaagtgttcatatttccgattacctgcagtggtcagacatataaatcaaatgaa |
7560058 |
T |
|
| Q |
206 |
tcacaatacttctatgaaaaacataacatcgatgttaatttcacttataagataaagtaaattatatctaactattaaggaatgatgaaaaattgtgaag |
305 |
Q |
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| T |
7560057 |
tcacaatacttctatgaaaaacataacatcgatgttaatttcacttataagataaagtaaattatatctaactattaaggaatgatgaaaaattgtg-ag |
7559959 |
T |
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| Q |
306 |
atgtccacaactgaagaagaaaataggagactgatggctatgcaggagttccatagaggagagactatagttaatttgc |
384 |
Q |
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| T |
7559958 |
atgtccacaactgaagaagaaaataggagactgatggctatgcaggagttccatagaggagagactatagttaatttgc |
7559880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 101 - 211
Target Start/End: Complemental strand, 1739817 - 1739704
Alignment:
| Q |
101 |
caagacatctgttttgaagaatgtaaggttttcag---ctctctcaaatttcagcaagtgttcatatttccgattacctgcagtggtcagacatataaat |
197 |
Q |
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| T |
1739817 |
caagatatctgctttgaagagtgtaaggttctcagaagctttttccagtttcagcaagtgttcatatttcggactacctgcagttgtcagacatacactt |
1739718 |
T |
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| Q |
198 |
caaatgaatcacaa |
211 |
Q |
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| T |
1739717 |
caaatgaatcacaa |
1739704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 192
Target Start/End: Original strand, 2010471 - 2010565
Alignment:
| Q |
101 |
caagacatctgttttgaagaatgtaaggttttcag---ctctctcaaatttcagcaagtgttcatatttccgattacctgcagtggtcagacata |
192 |
Q |
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| T |
2010471 |
caagatatctgctttgaagagtgtaaggttctcagaagctttttccagtttcagcaagtgttcatattttggactacctgcagttgtcagacata |
2010565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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