View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21239_high_14 (Length: 430)
Name: NF21239_high_14
Description: NF21239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21239_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 246 - 414
Target Start/End: Original strand, 1254091 - 1254259
Alignment:
| Q |
246 |
ctgacttgaacattggtgtctccagcaagtcctaggatttttgccaatccagcctgtcacagtnnnnnnnttataaacgttcaatcaatggtaaaaatag |
345 |
Q |
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| T |
1254091 |
ctgacttgaacattggtgtctccagcaagtcctaggatttttgccaatccagcctgtcacagtaaaaaaattataaacgttcaatcaatggtaaaaatag |
1254190 |
T |
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| Q |
346 |
aaaacaaaagtaactgtgaattttgtctaatcaaaatgaatgacatgagagtgtgtaccttgttaacag |
414 |
Q |
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| T |
1254191 |
aaaacaaaagtaactgtgaattttgtctaataaaaatgaatgacatgagagtgtgtaccttgttaacag |
1254259 |
T |
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Target: chr2; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 1253845 - 1254057
Alignment:
| Q |
1 |
ttttataaggatagtagaaattagtactattatatgagagannnnnnnnnnnnnnnnnngagagaattatatggtatgtccattaaactcattaaataaa |
100 |
Q |
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| T |
1253845 |
ttttataaggatagtagaaattagtactattatatgagagaatttttttatttttttttgagagaattatatggtatgtccattaaactcattaaataaa |
1253944 |
T |
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| Q |
101 |
taatgnnnnnnnngtcataatattatttcagatttagatggtgtcgctatcacacaaaaaagatttatatggtgtgacaaagtcacatattaacacgaac |
200 |
Q |
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| T |
1253945 |
taatgttttttttgtcataatattatttcagatttagatggtatcgctatcacacaaaaaagatttagatggtgtgacaaagtcacatattaacacgaac |
1254044 |
T |
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| Q |
201 |
acgtaacgttctt |
213 |
Q |
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| T |
1254045 |
acgtaacgttctt |
1254057 |
T |
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