View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21239_high_15 (Length: 407)
Name: NF21239_high_15
Description: NF21239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21239_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 11932675 - 11933067
Alignment:
| Q |
1 |
aaagagcactggatgatcaagctggacgaattcagcgtcccacgtcttaaggtcgtgctctgaaggtttttcatcagaattcatagcattaacgtgcttc |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||| |||||| |
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| T |
11932675 |
aaagagcacgggatgatcaagctggacgaattcagcgtcccacgtcttaaggtcatgctctgaagatttttcatcagaattcacagcattaacatgcttc |
11932774 |
T |
|
| Q |
101 |
ttgcaatactcaataaccaaagccaagatcttaccacttacctcatagatcgggattcgattgttgtcaacaacgtcctcgatcaaattcttgatggttt |
200 |
Q |
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| T |
11932775 |
ttacaatactcaacaattaaagccaagatcttgccggttaccttagggatagggattcgattgttgtcaacaacgtcctcgatcaaattcttgatggttt |
11932874 |
T |
|
| Q |
201 |
taaattcca-------tgtcttctcgatttcaaagatctcgccatcagaacttgttagtgtgatcttctttgtcgatgattcaacacgatcagacatgat |
293 |
Q |
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| T |
11932875 |
taaattccatcgccactgtcttctcgatttcaaagatctcgccatcagaacttgtcagggtgatcttctttgtcgatgattcaacacgatcagacatgat |
11932974 |
T |
|
| Q |
294 |
ttagatttggatataaaccctaaccctaaatttatttctaggtttgaaaatagagtgagtgaattgaattgactgagagaaagaataggcgtt |
386 |
Q |
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| T |
11932975 |
ctcgatttggatataaaccctaaccctaaatttatttctaggttagaaaatagagtgagtgaattgaattgaattagtgaaagaataggcgtt |
11933067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 11929025 - 11929419
Alignment:
| Q |
1 |
aaagagcactggatgatcaagctggacgaattcagcgtcccacgtcttaaggtcgtgctctgaaggtttttcatcagaattcatagcattaacgtgcttc |
100 |
Q |
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||||||||| || |||||||||||||||||||||||||||||| ||||||| | |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
11929025 |
aaagagcacaggctgatcaagctggacgaattcagcgtcccacatcttaagagcatgctttgaaggtttttcatcagaattcatagcattaacgtgcttc |
11929124 |
T |
|
| Q |
101 |
ttgcaatactcaataaccaaagccaagatcttaccacttacctcatagatcgggattcgattgttgtcaacaacgtcctcgatcaaattcttgatggttt |
200 |
Q |
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||||||||||||||||||||||||||||| | ||| ||||||| ||||| ||||||||| |||||||| ||| |||||||||||||||||||||||||| |
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| T |
11929125 |
ttgcaatactcaataaccaaagccaagatttcacctcttaccttgtagatagggattcgagtgttgtcatcaaggtcctcgatcaaattcttgatggttt |
11929224 |
T |
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| Q |
201 |
taaattcca-------tgtcttctcgatttcaaagatctcgccatcagaacttgttagtgtgatcttctttgtcgatgattcaacacgatcagacatgat |
293 |
Q |
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|| |||||| | |||||||||||||||||||||||| ||||||||||| | |||||||||||||| |||||||||||| ||||||||||||| |
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| T |
11929225 |
tagattccatcgccacttccttctcgatttcaaagatctcgccgtcagaacttgtcaaggtgatcttctttgttgatgattcaacatgatcagacatgat |
11929324 |
T |
|
| Q |
294 |
ttagatttggatataaaccctaaccctaaatttatttctaggtttgaaaatagagtgagtgaattgaattgactgagagaaagaataggcgttac |
388 |
Q |
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|| || |||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
11929325 |
ttcgaattggatctaaaccttaacactaaatttatttctaggtttgaaaatagagtgagtgaattgaattgaatgagagaaagaataggagttac |
11929419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 316
Target Start/End: Complemental strand, 11160499 - 11160451
Alignment:
| Q |
268 |
gatgattcaacacgatcagacatgatttagatttggatataaaccctaa |
316 |
Q |
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||||||||||||| ||||||||||||| |||||||||| ||||||||| |
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| T |
11160499 |
gatgattcaacaccgtcagacatgattttgatttggataaaaaccctaa |
11160451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 132
Target Start/End: Complemental strand, 11160715 - 11160651
Alignment:
| Q |
68 |
ttttcatcagaattcatagcattaacgtgcttcttgcaatactcaataaccaaagccaagatctt |
132 |
Q |
| |
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|||||||||||| | |||| | ||| ||||||||||||| ||||||||||| |||||||||||| |
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| T |
11160715 |
ttttcatcagaactggtagcgtcaacatgcttcttgcaatgctcaataaccatagccaagatctt |
11160651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 141
Target Start/End: Original strand, 11179305 - 11179361
Alignment:
| Q |
85 |
agcattaacgtgcttcttgcaatactcaataaccaaagccaagatcttaccacttac |
141 |
Q |
| |
|
||||| ||| || |||||||||||||||||||||| |||||||||||| ||| |||| |
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| T |
11179305 |
agcatcaacatgtttcttgcaatactcaataaccatagccaagatcttgccagttac |
11179361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 11182247 - 11182187
Alignment:
| Q |
14 |
tgatcaagctggacgaattcagcgtcccacgtcttaaggtcgtgctctgaaggtttttcat |
74 |
Q |
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| T |
11182247 |
tgatcaacctggacgaattcagcgtcccacttcttaagttcatcctctggtggtttttcat |
11182187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 11197747 - 11197795
Alignment:
| Q |
84 |
tagcattaacgtgcttcttgcaatactcaataaccaaagccaagatctt |
132 |
Q |
| |
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|||||||||| || ||||||||||||||||||| || |||||||||||| |
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| T |
11197747 |
tagcattaacatgtttcttgcaatactcaataaacatagccaagatctt |
11197795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 85 - 132
Target Start/End: Original strand, 11166291 - 11166338
Alignment:
| Q |
85 |
agcattaacgtgcttcttgcaatactcaataaccaaagccaagatctt |
132 |
Q |
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||||| ||| || |||||||||||||||||||||| |||||||||||| |
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| T |
11166291 |
agcatcaacatgtttcttgcaatactcaataaccatagccaagatctt |
11166338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 132
Target Start/End: Original strand, 11189953 - 11190014
Alignment:
| Q |
71 |
tcatcagaattcatagcattaacgtgcttcttgcaatactcaataaccaaagccaagatctt |
132 |
Q |
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||||||||| | | ||||| ||| || |||||||||||||||||||||| ||||||||||| |
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| T |
11189953 |
tcatcagaacttacagcatcaacatgtttcttgcaatactcaataaccatggccaagatctt |
11190014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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