View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21239_high_17 (Length: 406)
Name: NF21239_high_17
Description: NF21239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21239_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 329
Target Start/End: Original strand, 54238259 - 54238564
Alignment:
| Q |
19 |
gtttaaacaccgattaatccgaaaactactttctccgtctattaacgaatgatgacccaacatataaattgttagcattagaaaaatttgaaccagagac |
118 |
Q |
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| T |
54238259 |
gtttaaacatcgattaattcgaaaactaatttcttcgtctattaacgaatgatgacccaacatataaattgttagcattagaaaaatttgaaccagagat |
54238358 |
T |
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| Q |
119 |
ctaaagaaaaacacacattttcgaggtcacaaacctacgccactaaactaaccatgggtttttaaataaaaacgcatttgattaacnnnnnnnnncacaa |
218 |
Q |
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| T |
54238359 |
ctaaagaaaaacacaca-tttcgagatcacaaacctacgccactaaactaaccatgggtttttaaataaaaatgcatttaattaactttttttttcacaa |
54238457 |
T |
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| Q |
219 |
atgcaagattcttggagaaaattgagtttgaagggaaggaaggaaataataggaaggttggatttgatgaagaacataatattactggtgagaaagtttt |
318 |
Q |
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| T |
54238458 |
atgcaagattcttggagaaaattgagtttgaag----ggaaggaaataataggaaggttggatttgatgaagaacataatattactggtgagaaagtttt |
54238553 |
T |
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| Q |
319 |
cgtgcctgtaa |
329 |
Q |
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| T |
54238554 |
cgtgcctgtaa |
54238564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 351 - 397
Target Start/End: Original strand, 54238589 - 54238635
Alignment:
| Q |
351 |
gattatatagcattcacacataatttattattccgccacagtattat |
397 |
Q |
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| T |
54238589 |
gattatatagcattcacacataatttattattccgccacagtattat |
54238635 |
T |
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