View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21239_high_23 (Length: 353)
Name: NF21239_high_23
Description: NF21239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21239_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 5 - 335
Target Start/End: Original strand, 42967389 - 42967720
Alignment:
| Q |
5 |
acgaaatcttgaactgcgtatagaaacaaaacgaaccacttctattcttggagctcctccaatatacgacacctacccacacagatgaatatttggttga |
104 |
Q |
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| T |
42967389 |
acgaaattttgaattgcgtatagaaacaaaacgaaccacttctattcttggagctcctccaatatacgacacctacccacatagatgaatatttggttga |
42967488 |
T |
|
| Q |
105 |
atgatgtgtctcctaattaaattgtcggttgtaggtaatcgatttcacagaagatgccaaacaaataaatc-gagtttaagggaacatatgattaattgg |
203 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42967489 |
atgatgtgtctcctaattaagttgtcggttgtaggtaatcgatttcacagaaaatgccaaacaaataaatctgagtttaagggaacatatgattaattgg |
42967588 |
T |
|
| Q |
204 |
ctttgagaatattactagtctattcttagatcacatttagatcaatttgagttgagggactcttgaatttctgtgaatttttcaataattacgagagcct |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
42967589 |
ctttgagaatattactagtctattcttagatcacatttagatcaatttgagttgagggactcttgaatttctgtcaatttttcaataattacgagagcct |
42967688 |
T |
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| Q |
304 |
tgagctttgtatttgacatgtttgggtcataa |
335 |
Q |
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| T |
42967689 |
tgagctttgtatttgacatgtttgggtcataa |
42967720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 59 - 174
Target Start/End: Complemental strand, 39566755 - 39566638
Alignment:
| Q |
59 |
tcctccaatatacgacacctacccacacagat--gaatatttggttgaatgatgtgtctcctaattaaattgtcggttgtaggtaatcgatttcacagaa |
156 |
Q |
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||||||| ||||| ||||||||||||||| || |||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||| | ||||| |
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| T |
39566755 |
tcctccattataccacacctacccacacaaatatgaatatttggttgaatgacgtgtctcctaattaagttgtttgttgtaggtaatcgattacgcagaa |
39566656 |
T |
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| Q |
157 |
gatgccaaacaaataaat |
174 |
Q |
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| T |
39566655 |
gacgccaaacaaataaat |
39566638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 15071955 - 15071901
Alignment:
| Q |
5 |
acgaaatcttgaactgcgtatagaaacaaaacgaaccacttctattcttggagct |
59 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
15071955 |
acgaaatcttgaattgcgtatagaaacaaaacgaaccacttctattcttggagct |
15071901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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