View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21239_low_1 (Length: 826)

Name: NF21239_low_1
Description: NF21239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21239_low_1
NF21239_low_1
[»] chr2 (56 HSPs)
chr2 (18-413)||(39223100-39223496)
chr2 (492-820)||(39222699-39223027)
chr2 (492-765)||(39192341-39192614)
chr2 (492-765)||(39198021-39198294)
chr2 (583-819)||(39389129-39389365)
chr2 (590-762)||(39161714-39161886)
chr2 (590-762)||(39207308-39207480)
chr2 (590-752)||(39215514-39215676)
chr2 (279-412)||(39192190-39192325)
chr2 (279-412)||(39197872-39198005)
chr2 (492-613)||(39388996-39389117)
chr2 (496-613)||(39161905-39162022)
chr2 (496-613)||(39207172-39207289)
chr2 (136-229)||(39216139-39216232)
chr2 (19-105)||(39162964-39163051)
chr2 (19-105)||(39206143-39206230)
chr2 (137-219)||(39162358-39162440)
chr2 (137-219)||(39206754-39206836)
chr2 (633-765)||(39397891-39398023)
chr2 (19-102)||(39380877-39380962)
chr2 (620-756)||(39137760-39137896)
chr2 (144-231)||(39191933-39192020)
chr2 (594-765)||(39468208-39468379)
chr2 (492-587)||(39215721-39215813)
chr2 (19-105)||(39196911-39196997)
chr2 (595-746)||(39369996-39370147)
chr2 (591-754)||(39459132-39459295)
chr2 (19-105)||(39387895-39387985)
chr2 (692-765)||(39137709-39137782)
chr2 (158-231)||(39388604-39388677)
chr2 (583-715)||(39414774-39414906)
chr2 (138-231)||(39370601-39370695)
chr2 (699-765)||(44895631-44895697)
chr2 (499-576)||(39421677-39421754)
chr2 (591-724)||(39473409-39473542)
chr2 (589-665)||(39381509-39381585)
chr2 (530-578)||(39473285-39473333)
chr2 (591-722)||(39421832-39421963)
chr2 (696-765)||(39222397-39222466)
chr2 (515-556)||(39468447-39468488)
chr2 (522-570)||(39137997-39138045)
chr2 (692-756)||(39152462-39152526)
chr2 (313-405)||(39162049-39162140)
chr2 (313-405)||(39207054-39207145)
chr2 (355-403)||(39381276-39381324)
chr2 (511-578)||(39381368-39381435)
chr2 (698-757)||(39451806-39451865)
chr2 (520-562)||(39370243-39370285)
chr2 (291-412)||(39370332-39370451)
chr2 (313-403)||(39388879-39388969)
chr2 (692-754)||(39458469-39458531)
chr2 (517-578)||(39152694-39152755)
chr2 (153-206)||(39197623-39197676)
chr2 (359-412)||(39215829-39215882)
chr2 (696-765)||(39390292-39390361)
chr2 (517-570)||(39459379-39459432)
[»] chr5 (4 HSPs)
chr5 (583-819)||(33560829-33561065)
chr5 (19-105)||(33561983-33562070)
chr5 (494-583)||(33561107-33561196)
chr5 (283-405)||(33561225-33561348)
[»] chr6 (2 HSPs)
chr6 (594-759)||(16113174-16113339)
chr6 (501-580)||(16113416-16113495)
[»] chr7 (3 HSPs)
chr7 (620-756)||(19807710-19807846)
chr7 (692-752)||(19807672-19807732)
chr7 (523-570)||(19807947-19807994)
[»] chr3 (1 HSPs)
chr3 (687-757)||(51574944-51575014)


Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 56)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 18 - 413
Target Start/End: Complemental strand, 39223496 - 39223100
Alignment:
Q  18 acatgtaagatgcaactgcatatttagat-gtagatatttaagctcttcatatttatagaaacatcagtaaatgatagtgacaataagactttnnnnnnn 116  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  39223496 acatgtaagatgcaactgcatatttagatagtagatatttaagctcttcatatttatagaaacatcagtaaatgatagtgacaataagactttaaaaaat 39223397  T
Q  117 nnnnnnnntagtatgcaagttaactgaatcaacggagaaagtgttagattttattgattaataaacaagactaaaaatagttgcactaattggactatta 216  Q
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39223396 aaaaaaaatagtatgcaagttaactgaatcaacggagaaggtgttagattttattgattaataaacaagactaaaaatagttgcactaattggactatta 39223297  T
Q  217 agtgcctctcaatgtaattaaaactacattaatatactaaactaatctttcaatagcagtagcaagataatccaaattagtttgacactttgtggatgtg 316  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  39223296 agtgcctctcaatgtaattagaactacattaatatactaaactaatctttcaatagcagtagcaagataatccaaattagtttgacagtttgtggatgtg 39223197  T
Q  317 atacgacaactggaaaagcttttaaaattgtctaatatatacaacattaacatgattaaaaatattcttaaagaattaagtagatcaggttgtaaag 413  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39223196 atacgaaaactggaaaagcttttaaaattgtctaatatatacaacattaacatgattaaaaatattcttaaagaattaagtagatcaggttgtaaag 39223100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 492 - 820
Target Start/End: Complemental strand, 39223027 - 39222699
Alignment:
Q  492 taagaggaacagttgtaaagaaattttttcaataaacaagatgaataagaacatttacccgattctttttcttcatcaatatattttttccttgacacag 591  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  39223027 taagaggaacagttgtaaagaaattttttcaataaacaagatgaataagaacatttacccgattctttttctccatcaatatattttttccttgacacag 39222928  T
Q  592 gatccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctctgctgactcaagtttattccatcgtcc 691  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |    
T  39222927 gatccttgacttgtccttcaaaccacttttctttgaagttgagctccttcacctttgctttgaacttattctcttctgactcaagtttattccatcgttc 39222828  T
Q  692 ttcaaattgcttctcttttgatttaaagtcctcgacttggctttcgaaatgcttcttttttgattcgagttcctcctcctttgattttatgtccctcact 791  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  39222827 ttcaaattgcttctcttttgatttaaactcctcgacttggctttcgaaatgcttcttttttgattcgagttcctcctcctttgattttatgtccttcact 39222728  T
Q  792 tgttcttcaaattccttctcctttgattc 820  Q
    |||||||||||||||||||||||||||||    
T  39222727 tgttcttcaaattccttctcctttgattc 39222699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 492 - 765
Target Start/End: Original strand, 39192341 - 39192614
Alignment:
Q  492 taagaggaacagttgtaaagaaattttttcaataaacaagatgaataagaacatttacccgattctttttcttcatcaatatattttttccttgacacag 591  Q
    ||||||||| ||||| || |||||| | |||||||| |||||||||||| ||||||||| ||||||||||| ||||||||||| |||||||||||| |||    
T  39192341 taagaggaatagttgcaatgaaattctgtcaataaataagatgaataagcacatttacctgattctttttcctcatcaatatactttttccttgacgcag 39192440  T
Q  592 gatccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctctgctgactcaagtttattccatcgtcc 691  Q
    ||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| | ||||||||||    
T  39192441 gatccttgactagtccttcaaactgcttttcttttaagttgagctccttcacctttgctttgaacttattctcttttgactcaagttcactccatcgtcc 39192540  T
Q  692 ttcaaattgcttctcttttgatttaaagtcctcgacttggctttcgaaatgcttcttttttgattcgagttcct 765  Q
    ||| |||||||||||||||||||| || ||||| ||||| ||||  |||||||||||| | ||||| |||||||    
T  39192541 ttctaattgcttctcttttgatttgaactcctccacttgacttttaaaatgcttctttctagattcaagttcct 39192614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 492 - 765
Target Start/End: Original strand, 39198021 - 39198294
Alignment:
Q  492 taagaggaacagttgtaaagaaattttttcaataaacaagatgaataagaacatttacccgattctttttcttcatcaatatattttttccttgacacag 591  Q
    ||||||||| ||||| || |||||| | |||||||| |||||||||||| ||||||||| ||||||||||| ||||||||||| |||||||||||| |||    
T  39198021 taagaggaatagttgcaatgaaattctgtcaataaataagatgaataagcacatttacctgattctttttcctcatcaatatactttttccttgacgcag 39198120  T
Q  592 gatccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctctgctgactcaagtttattccatcgtcc 691  Q
    ||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| | ||||||||||    
T  39198121 gatccttgactagtccttcaaactgcttttcttttaagttgagctccttcacctttgctttgaacttattctcttttgactcaagttcactccatcgtcc 39198220  T
Q  692 ttcaaattgcttctcttttgatttaaagtcctcgacttggctttcgaaatgcttcttttttgattcgagttcct 765  Q
    ||| |||||||||||||||||||| || ||||| ||||| ||||  |||||||||||| | ||||| |||||||    
T  39198221 ttctaattgcttctcttttgatttgaactcctccacttgacttttaaaatgcttctttctagattcaagttcct 39198294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 583 - 819
Target Start/End: Original strand, 39389129 - 39389365
Alignment:
Q  583 ttgacacaggatccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctctgctgactcaagtttatt 682  Q
    ||||| ||||||| |||||||| |||||||||  ||||||||||||||||||||||||||||||| |||||||||||| ||||    |||| ||||  ||    
T  39389129 ttgactcaggatcgttgacttgcccttcaaactgcttttcttttaagttgagctccttcacctttactttgaacttatactctttcaactccagttcgtt 39389228  T
Q  683 ccatcgtccttcaaattgcttctcttttgatttaaagtcctcgacttggctttcgaaatgcttcttttttgattcgagttcctcctcctttgattttatg 782  Q
    |||||||| || |||| ||| |||||||||||| |||||||| ||||||||||  ||||||| ||||| ||||||||||||||||||||||||||| |||    
T  39389229 ccatcgtcttttaaatcgctgctcttttgatttgaagtcctcaacttggcttttcaaatgctccttttgtgattcgagttcctcctcctttgatttaatg 39389328  T
Q  783 tccctcacttgttcttcaaattccttctcctttgatt 819  Q
     || ||||||||||||||||||||| ||| |||||||    
T  39389329 cccttcacttgttcttcaaattcctcctcttttgatt 39389365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 590 - 762
Target Start/End: Complemental strand, 39161886 - 39161714
Alignment:
Q  590 aggatccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctctgctgactcaagtttattccatcgt 689  Q
    ||||||||||||||||||||||||   ||||||||||||||||||||||||| | ||| |||||| ||||| ||||   | ||| |||| |||||| |||    
T  39161886 aggatccttgacttgtccttcaaattgcttttcttttaagttgagctccttctcatttactttgagcttatactctttcgtctccagttcattccaccgt 39161787  T
Q  690 ccttcaaattgcttctcttttgatttaaagtcctcgacttggctttcgaaatgcttcttttttgattcgagtt 762  Q
    ||||||||||| |||| ||||||||| |||||||| ||||| ||||| |||||||| ||||||||||||||||    
T  39161786 ccttcaaattgtttctgttttgatttgaagtcctcaacttgtctttcaaaatgcttattttttgattcgagtt 39161714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 590 - 762
Target Start/End: Original strand, 39207308 - 39207480
Alignment:
Q  590 aggatccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctctgctgactcaagtttattccatcgt 689  Q
    ||||||||||||||||||||||||   ||||||||||||||||||||||||| | ||| |||||| ||||| ||||   | ||| |||| |||||| |||    
T  39207308 aggatccttgacttgtccttcaaattgcttttcttttaagttgagctccttctcatttactttgagcttatactctttcgtctccagttcattccaccgt 39207407  T
Q  690 ccttcaaattgcttctcttttgatttaaagtcctcgacttggctttcgaaatgcttcttttttgattcgagtt 762  Q
    ||||||||||| |||| ||||||||| |||||||| ||||| ||||| |||||||| ||||||||||||||||    
T  39207408 ccttcaaattgtttctgttttgatttgaagtcctcaacttgtctttcaaaatgcttattttttgattcgagtt 39207480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 590 - 752
Target Start/End: Complemental strand, 39215676 - 39215514
Alignment:
Q  590 aggatccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctctgctgactcaagtttattccatcgt 689  Q
    ||||||||||||||||||| |||||  ||| |||||||| |||| |||||| |||| | |||||||||||||||||  | |||||||||  ||||| |||    
T  39215676 aggatccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctcttttaactcaagttctttccaccgt 39215577  T
Q  690 ccttcaaattgcttctcttttgatttaaagtcctcgacttggctttcgaaatgcttctttttt 752  Q
    ||||||||||||||||||||||||| ||||  ||| ||||| ||||| || ||||||||||||    
T  39215576 ccttcaaattgcttctcttttgattcaaagctctcaacttgtctttcaaattgcttctttttt 39215514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 279 - 412
Target Start/End: Original strand, 39192190 - 39192325
Alignment:
Q  279 caagataatccaaattagtttgacac--tttgtggatgtgatacgacaactggaaaagcttttaaaattgtctaatatatacaacattaacatgattaaa 376  Q
    |||||||||| |||||||||||||||  | ||||||||||||| || |||||||||| ||||| |||||| |||||| ||| ||||||||||||||||||    
T  39192190 caagataatcgaaattagtttgacacagtctgtggatgtgatatgaaaactggaaaatcttttcaaattgactaatacatagaacattaacatgattaaa 39192289  T
Q  377 aatattcttaaagaattaagtagatcaggttgtaaa 412  Q
    ||| || |||||||||||||||||||| ||| ||||    
T  39192290 aatgtttttaaagaattaagtagatcatgttataaa 39192325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 279 - 412
Target Start/End: Original strand, 39197872 - 39198005
Alignment:
Q  279 caagataatccaaattagtttgacactttgtggatgtgatacgacaactggaaaagcttttaaaattgtctaatatatacaacattaacatgattaaaaa 378  Q
    |||||||||| |||||||||||||| | ||||||||||| | || ||| |||||| ||||| |||||| |||||| ||| ||||||||||||||||||||    
T  39197872 caagataatcgaaattagtttgacagtctgtggatgtgaaatgaaaacgggaaaatcttttcaaattgactaatacatagaacattaacatgattaaaaa 39197971  T
Q  379 tattcttaaagaattaagtagatcaggttgtaaa 412  Q
    | || |||||||||||||||||||| ||| ||||    
T  39197972 tgtttttaaagaattaagtagatcatgttataaa 39198005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 492 - 613
Target Start/End: Original strand, 39388996 - 39389117
Alignment:
Q  492 taagaggaacagttgtaaagaaattttttcaataaacaagatgaataagaacatttacccgattctttttcttcatcaatatattttttccttgacacag 591  Q
    ||||||||||||||||||| ||||| |||||||||||  |||||||||||||||||||| |||||||||||  |||||| |||||||||||||||| | |    
T  39388996 taagaggaacagttgtaaaaaaattctttcaataaactggatgaataagaacatttaccggattctttttccccatcaaaatattttttccttgactcgg 39389095  T
Q  592 gatccttgacttgtccttcaaa 613  Q
    | ||||| | |||||| |||||    
T  39389096 gctcctttatttgtccatcaaa 39389117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 496 - 613
Target Start/End: Complemental strand, 39162022 - 39161905
Alignment:
Q  496 aggaacagttgtaaagaaattttttcaataaacaagatgaataagaacatttacccgattctttttcttcatcaatatattttttccttgacacaggatc 595  Q
    |||||||||| |||  ||||| ||||||||| | ||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| ||    
T  39162022 aggaacagttataataaaattctttcaataatctagatgaagaagaacatttaccggattctttttcctcatcaatatattttttccttgactcaggctc 39161923  T
Q  596 cttgacttgtccttcaaa 613  Q
    ||| | |||||| |||||    
T  39161922 ctttagttgtccatcaaa 39161905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 496 - 613
Target Start/End: Original strand, 39207172 - 39207289
Alignment:
Q  496 aggaacagttgtaaagaaattttttcaataaacaagatgaataagaacatttacccgattctttttcttcatcaatatattttttccttgacacaggatc 595  Q
    |||||||||| |||  ||||| ||||||||| | ||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| ||    
T  39207172 aggaacagttataataaaattctttcaataatctagatgaagaagaacatttaccggattctttttcctcatcaatatattttttccttgactcaggctc 39207271  T
Q  596 cttgacttgtccttcaaa 613  Q
    ||| | |||||| |||||    
T  39207272 ctttagttgtccatcaaa 39207289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 136 - 229
Target Start/End: Complemental strand, 39216232 - 39216139
Alignment:
Q  136 ttaactgaatcaacggagaaagtgttagattttattgattaataaacaagactaaaaatagttgcactaattggactattaagtgcctctcaat 229  Q
    |||||||||||| |||||| | |||||||||| || |||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  39216232 ttaactgaatcaccggagacaatgttagatttcatcgattgataaacaagactagaaatagttgcactaattggactattaagtgcccctcaat 39216139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 39163051 - 39162964
Alignment:
Q  19 catgtaagatgcaactgcatatttagat-gtagatatttaagctcttcatatttatagaaacatcagtaaatgatagtgacaataaga 105  Q
    |||||||||||||||||||||||| ||  ||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||    
T  39163051 catgtaagatgcaactgcatattttgaaagtagatatttaagcttttcaaatttatggaaacatcagtaaatgatagtgacaataaga 39162964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 39206143 - 39206230
Alignment:
Q  19 catgtaagatgcaactgcatatttagat-gtagatatttaagctcttcatatttatagaaacatcagtaaatgatagtgacaataaga 105  Q
    |||||||||||||||||||||||| ||  ||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||    
T  39206143 catgtaagatgcaactgcatattttgaaagtagatatttaagcttttcaaatttatggaaacatcagtaaatgatagtgacaataaga 39206230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 137 - 219
Target Start/End: Complemental strand, 39162440 - 39162358
Alignment:
Q  137 taactgaatcaacggagaaagtgttagattttattgattaataaacaagactaaaaatagttgcactaattggactattaagt 219  Q
    |||||||||||| | |||||||||||||||| |||||||||||||||||||||  ||||||||||||||| ||||||||||||    
T  39162440 taactgaatcaaggtagaaagtgttagatttcattgattaataaacaagactattaatagttgcactaataggactattaagt 39162358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 137 - 219
Target Start/End: Original strand, 39206754 - 39206836
Alignment:
Q  137 taactgaatcaacggagaaagtgttagattttattgattaataaacaagactaaaaatagttgcactaattggactattaagt 219  Q
    |||||||||||| | |||||||||||||||| |||||||||||||||||||||  ||||||||||||||| ||||||||||||    
T  39206754 taactgaatcaaggtagaaagtgttagatttcattgattaataaacaagactattaatagttgcactaataggactattaagt 39206836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 633 - 765
Target Start/End: Original strand, 39397891 - 39398023
Alignment:
Q  633 agctccttcacctttgctttgaacttattctctgctgactcaagtttattccatcgtccttcaaattgcttctcttttgatttaaagtcctcgacttggc 732  Q
    ||||||| ||||||| ||||||||| |||||||  |||||||||||| ||||| ||| |||||| |||||| ||||||||||| || ||||| |||||||    
T  39397891 agctcctgcacctttactttgaactgattctcttttgactcaagttttttccaccgttcttcaatttgcttatcttttgatttgaaatcctcaacttggc 39397990  T
Q  733 tttcgaaatgcttcttttttgattcgagttcct 765  Q
    |||| || ||||| |||| | ||||||| ||||    
T  39397991 tttcaaagtgcttattttgtaattcgagctcct 39398023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 39380877 - 39380962
Alignment:
Q  19 catgtaagatgcaactgcatatttagat-gtagatatttaagctct-tcatatttatagaaacatcagtaaatgatagtgacaata 102  Q
    |||||||||||||||||||||||||||| | ||||||||||||||  |||||||||||||| | ||||||||||||||||||||||    
T  39380877 catgtaagatgcaactgcatatttagatagcagatatttaagctccctcatatttatagaagcgtcagtaaatgatagtgacaata 39380962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 620 - 756
Target Start/End: Complemental strand, 39137896 - 39137760
Alignment:
Q  620 ttcttttaagttgagctccttcacctttgctttgaacttattctctgctgactcaagtttattccatcgtccttcaaattgcttctcttttgatttaaag 719  Q
    ||||||||| |||||||| || |||  | |||||||||||||||||  |||||| ||||  ||||| ||| |||||| ||||||||||||||||||  |     
T  39137896 ttcttttaacttgagctctttgaccagtactttgaacttattctcttttgactcgagttctttccaccgttcttcaatttgcttctcttttgatttgtaa 39137797  T
Q  720 tcctcgacttggctttcgaaatgcttcttttttgatt 756  Q
    ||||||||||||||||| |  ||||||| ||||||||    
T  39137796 tcctcgacttggctttcaagttgcttctcttttgatt 39137760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 144 - 231
Target Start/End: Original strand, 39191933 - 39192020
Alignment:
Q  144 atcaacggagaaagtgttagattttattgattaataaacaagactaaaaatagttgcactaattggactattaagtgcctctcaatgt 231  Q
    ||||||| ||||||||| |||||| ||||||||||||| ||||| | |||||||||||||||| ||||||||||||||| || |||||    
T  39191933 atcaacgtagaaagtgtgagatttaattgattaataaataagacgagaaatagttgcactaataggactattaagtgccccttaatgt 39192020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 594 - 765
Target Start/End: Complemental strand, 39468379 - 39468208
Alignment:
Q  594 tccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctctgctgactcaagtttattccatcgtcctt 693  Q
    ||||||||||||||||||| |  ||| |||||||| |||| ||||||||||||| ||||||||  |||||||  |||||  | ||  || || ||| | |    
T  39468379 tccttgacttgtccttcaatctgcttctcttttaacttgaactccttcacctttactttgaaccgattctcttttgacttcaattctttacaccgttcat 39468280  T
Q  694 caaattgcttctcttttgatttaaagtcctcgacttggctttcgaaatgcttcttttttgattcgagttcct 765  Q
    |||||||||| ||||||||||| || ||||| ||||| || || ||||  ||||||||||||||||| ||||    
T  39468279 caaattgcttatcttttgatttgaaatcctcaacttgactgtcaaaatatttcttttttgattcgagctcct 39468208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 492 - 587
Target Start/End: Complemental strand, 39215813 - 39215721
Alignment:
Q  492 taagaggaacagttgtaaagaaattttttcaataaacaagatgaataagaacatttacccgattctttttcttcatcaatatattttttccttgac 587  Q
    |||||||||| ||||||  |||| | ||||||||||| |||||||||||||||||||||||||| | |||||   |||||||||||||||||||||    
T  39215813 taagaggaaccgttgtattgaaactctttcaataaactagatgaataagaacatttacccgattgtgtttct---tcaatatattttttccttgac 39215721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 39196911 - 39196997
Alignment:
Q  19 catgtaagatgcaactgcatatttagat-gtagatatttaagctcttcatatttatagaaacatcagtaaatgatagtgacaataaga 105  Q
    |||||||||| ||||||||||||||||| | ||||||||||||||| ||||||||||||| ||||| ||||||||| | |||||||||    
T  39196911 catgtaagattcaactgcatatttagatagcagatatttaagctctccatatttatagaagcatca-taaatgataataacaataaga 39196997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 595 - 746
Target Start/End: Complemental strand, 39370147 - 39369996
Alignment:
Q  595 ccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctctgctgactcaagtttattccatcgtccttc 694  Q
    |||||||||||| | |||||  ||| |||||||| | || |||||||||||   || ||||||| ||||||  | |||||||||  ||||| ||||||||    
T  39370147 ccttgacttgtcttccaaactgcttctcttttaattcgaactccttcacctgcactatgaacttgttctcttttaactcaagttctttccaccgtccttc 39370048  T
Q  695 aaattgcttctcttttgatttaaagtcctcgacttggctttcgaaatgcttc 746  Q
    ||||||||| ||||| ||||| |||| |||||||||| |||| || ||||||    
T  39370047 aaattgcttttctttcgatttgaagtgctcgacttgggtttcaaattgcttc 39369996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 591 - 754
Target Start/End: Complemental strand, 39459295 - 39459132
Alignment:
Q  591 ggatccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctctgctgactcaagtttattccatcgtc 690  Q
    |||||||||||||||||||||||   ||| |||||||| |||||||| |||||   | ||||||||||||||||| | |  || | ||  ||||   ||     
T  39459295 ggatccttgacttgtccttcaaattgcttgtcttttaacttgagctctttcactagtactttgaacttattctcttcagcatcgaattctttccgctgtt 39459196  T
Q  691 cttcaaattgcttctcttttgatttaaagtcctcgacttggctttcgaaatgcttcttttttga 754  Q
    |||||||||||||||||||| |||| |||||||| |  |||||||| || ||||||||||||||    
T  39459195 cttcaaattgcttctcttttaatttgaagtcctcaaactggctttcaaattgcttcttttttga 39459132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 39387895 - 39387985
Alignment:
Q  19 catgtaagatgcaactgcatatttagat-gtagatatt---taagctcttcatatttatagaaacatcagtaaatgatagtgacaataaga 105  Q
    |||||||||| ||||||||||||||||  | ||||| |   ||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  39387895 catgtaagattcaactgcatatttagaaagcagataataattaagctcttcatatttacagaagcatcagtaaatgatagtgacaataaga 39387985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 692 - 765
Target Start/End: Complemental strand, 39137782 - 39137709
Alignment:
Q  692 ttcaaattgcttctcttttgatttaaagtcctcgacttggctttcgaaatgcttcttttttgattcgagttcct 765  Q
    ||||| |||||||||||||||||| || ||||| |||||| ||||||| |||||||||||||||| ||| ||||    
T  39137782 ttcaagttgcttctcttttgatttgaaatcctcaacttggttttcgaattgcttcttttttgatttgagctcct 39137709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 231
Target Start/End: Original strand, 39388604 - 39388677
Alignment:
Q  158 tgttagattttattgattaataaacaagactaaaaatagttgcactaattggactattaagtgcctctcaatgt 231  Q
    ||||||| || |||||||||||| |||||||| ||||||| ||||| || ||||||||||||||| ||||||||    
T  39388604 tgttagagttcattgattaataagcaagactagaaatagtagcactgataggactattaagtgcccctcaatgt 39388677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 583 - 715
Target Start/End: Original strand, 39414774 - 39414906
Alignment:
Q  583 ttgacacaggatccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctctgctgactcaagtttatt 682  Q
    ||||| |||||||||| |||||||||||||||   || || ||||| |||||||| || |||  |  |||||||||||||||   || ||  ||||  ||    
T  39414774 ttgactcaggatccttaacttgtccttcaaactgtttctcatttaacttgagctctttgaccagtagtttgaacttattctcatttgtcttgagttcttt 39414873  T
Q  683 ccatcgtccttcaaattgcttctcttttgattt 715  Q
    ||||||| |||||||||||||||||||||||||    
T  39414874 ccatcgttcttcaaattgcttctcttttgattt 39414906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 231
Target Start/End: Complemental strand, 39370695 - 39370601
Alignment:
Q  138 aactgaatcaacggagaaagtgttagattttattgattaata-aacaagactaaaaatagttgcactaattggactattaagtgcctctcaatgt 231  Q
    ||||||||||  ||||| |||| ||||||| ||| ||||||  |||||||||| || ||||||||||||| ||| ||||||||||| ||||||||    
T  39370695 aactgaatcacaggagagagtgatagatttcattcattaatccaacaagactagaagtagttgcactaataggattattaagtgcccctcaatgt 39370601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 699 - 765
Target Start/End: Original strand, 44895631 - 44895697
Alignment:
Q  699 tgcttctcttttgatttaaagtcctcgacttggctttcgaaatgcttcttttttgattcgagttcct 765  Q
    ||||||||||||||||| ||| |||| ||||||||||| ||| ||||||||| ||||||||| ||||    
T  44895631 tgcttctcttttgatttgaaggcctcaacttggctttcaaaacgcttcttttctgattcgagctcct 44895697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 499 - 576
Target Start/End: Original strand, 39421677 - 39421754
Alignment:
Q  499 aacagttgtaaagaaattttttcaataaacaagatgaataagaacatttacccgattctttttcttcatcaatatatt 576  Q
    |||||||| || |||| | ||||||||||  ||||||||||||||||||||| ||||| ||||| ||||||| |||||    
T  39421677 aacagttgaaatgaaactctttcaataaattagatgaataagaacatttaccagattcattttcctcatcaaaatatt 39421754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 591 - 724
Target Start/End: Original strand, 39473409 - 39473542
Alignment:
Q  591 ggatccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctctgctgactcaagtttattccatcgtc 690  Q
    ||||||| ||||| |||||||| |  ||| |||||||| |||||   ||||||   | |||||||||||||||||  |||||| ||||  |||||||||     
T  39473409 ggatcctcgacttctccttcaacctgcttctcttttaacttgagtgacttcactagtactttgaacttattctcttttgactcgagttctttccatcgtt 39473508  T
Q  691 cttcaaattgcttctcttttgatttaaagtcctc 724  Q
    |||||||||||||| || ||||||| || |||||    
T  39473509 cttcaaattgcttcgctattgatttgaattcctc 39473542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 589 - 665
Target Start/End: Original strand, 39381509 - 39381585
Alignment:
Q  589 caggatccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctct 665  Q
    ||||||||||| |||||| |||||||  ||| |||||||| |||||||| |||| |||| ||||||||| |||||||    
T  39381509 caggatccttgtcttgtctttcaaactgcttctcttttaacttgagctcattcatctttactttgaactcattctct 39381585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 530 - 578
Target Start/End: Original strand, 39473285 - 39473333
Alignment:
Q  530 agatgaataagaacatttacccgattctttttcttcatcaatatatttt 578  Q
    |||||||||||||||||||||||||||| |||| ||||||| |||||||    
T  39473285 agatgaataagaacatttacccgattctatttcctcatcaaaatatttt 39473333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 591 - 722
Target Start/End: Original strand, 39421832 - 39421963
Alignment:
Q  591 ggatccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctctgctgactcaagtttattccatcgtc 690  Q
    |||||||||||| || || |||| | ||| |||||||| |||||||| |||||   | |||||||||||||||||  |||||  ||||  |||||| ||     
T  39421832 ggatccttgactagtgctccaaatcgcttgtcttttaatttgagctctttcactagtactttgaacttattctcttttgacttgagttctttccattgtt 39421931  T
Q  691 cttcaaattgcttctcttttgatttaaagtcc 722  Q
    ||||||||| |||||| ||| |||| ||||||    
T  39421932 cttcaaatttcttctcgtttaatttgaagtcc 39421963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 696 - 765
Target Start/End: Complemental strand, 39222466 - 39222397
Alignment:
Q  696 aattgcttctcttttgatttaaagtcctcgacttggctttcgaaatgcttcttttttgattcgagttcct 765  Q
    |||||| ||||||||||||| || ||||| |||||  |||| |||||||||||||| ||||| |||||||    
T  39222466 aattgcctctcttttgatttgaactcctccacttgattttcaaaatgcttctttttggattccagttcct 39222397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 515 - 556
Target Start/End: Complemental strand, 39468488 - 39468447
Alignment:
Q  515 ttttttcaataaacaagatgaataagaacatttacccgattc 556  Q
    |||||||||||||| ||||||||||||||||||||| |||||    
T  39468488 ttttttcaataaactagatgaataagaacatttaccagattc 39468447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 522 - 570
Target Start/End: Complemental strand, 39138045 - 39137997
Alignment:
Q  522 aataaacaagatgaataagaacatttacccgattctttttcttcatcaa 570  Q
    ||||||| ||||||||||||||  ||||||||||||||||| |||||||    
T  39138045 aataaactagatgaataagaactcttacccgattctttttcctcatcaa 39137997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 692 - 756
Target Start/End: Complemental strand, 39152526 - 39152462
Alignment:
Q  692 ttcaaattgcttctcttttgatttaaagtcctcgacttggctttcgaaatgcttcttttttgatt 756  Q
    |||||||||||||||||||| ||| |||||||| || ||| |||| || | ||||||||||||||    
T  39152526 ttcaaattgcttctcttttgttttgaagtcctcaacctggatttcaaatttcttcttttttgatt 39152462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 313 - 405
Target Start/End: Complemental strand, 39162140 - 39162049
Alignment:
Q  313 tgtgatacgacaactggaaaagcttttaaaattgtctaatatatacaacattaacatgattaaaaatattcttaaagaattaagtagatcagg 405  Q
    ||||||| || | |||||||||||||| |||| | |||| | ||||||||||||||||| ||||||  |  ||||| ||||||||||||||||    
T  39162140 tgtgatatgaaatctggaaaagcttttcaaat-gactaagacatacaacattaacatgagtaaaaacgtgtttaaaaaattaagtagatcagg 39162049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 313 - 405
Target Start/End: Original strand, 39207054 - 39207145
Alignment:
Q  313 tgtgatacgacaactggaaaagcttttaaaattgtctaatatatacaacattaacatgattaaaaatattcttaaagaattaagtagatcagg 405  Q
    ||||||| || | |||||||||||||| |||| | |||| | ||||||||||||||||| ||||||  |  ||||| ||||||||||||||||    
T  39207054 tgtgatatgaaatctggaaaagcttttcaaat-gactaagacatacaacattaacatgagtaaaaacgtgtttaaaaaattaagtagatcagg 39207145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 355 - 403
Target Start/End: Original strand, 39381276 - 39381324
Alignment:
Q  355 atacaacattaacatgattaaaaatattcttaaagaattaagtagatca 403  Q
    |||||||||||||| ||||||||||||| |||| |||||| ||||||||    
T  39381276 atacaacattaacacgattaaaaatatttttaatgaattatgtagatca 39381324  T

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Target: chr2; HSP #46
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 511 - 578
Target Start/End: Original strand, 39381368 - 39381435
Alignment:
Q  511 gaaattttttcaataaacaagatgaataagaacatttacccgattctttttcttcatcaatatatttt 578  Q
    |||||| ||||| ||||| | ||||||||||||||||||| |||||||  || || ||||||||||||    
T  39381368 gaaattctttcagtaaactatatgaataagaacatttaccagattcttgctcctcgtcaatatatttt 39381435  T

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Target: chr2; HSP #47
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 698 - 757
Target Start/End: Complemental strand, 39451865 - 39451806
Alignment:
Q  698 ttgcttctcttttgatttaaagtcctcgacttggctttcgaaatgcttcttttttgattc 757  Q
    |||| ||||||||||||| |  ||||| ||||||||||| |||||||||||||| |||||    
T  39451865 ttgcctctcttttgatttgagctcctccacttggctttcaaaatgcttctttttagattc 39451806  T

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Target: chr2; HSP #48
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 520 - 562
Target Start/End: Complemental strand, 39370285 - 39370243
Alignment:
Q  520 tcaataaacaagatgaataagaacatttacccgattctttttc 562  Q
    ||||||||| |||||||||||||||||||||| | ||||||||    
T  39370285 tcaataaactagatgaataagaacatttacccaaatctttttc 39370243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #49
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 291 - 412
Target Start/End: Complemental strand, 39370451 - 39370332
Alignment:
Q  291 aattagtttgacactttgtggatgtgatacgacaactggaaaagcttttaaaattgtctaatatatacaacattaacatgattaaaaatattcttaaaga 390  Q
    ||||||||||||  | ||||| ||||||| |  || ||||||||||||| |||||| | || | ||||||||||||||||||||| ||| || ||| |||    
T  39370451 aattagtttgac--tgtgtgggtgtgatatgtaaattggaaaagctttttaaattgaccaagacatacaacattaacatgattaagaatgtttttataga 39370354  T
Q  391 attaagtagatcaggttgtaaa 412  Q
    | ||  |||||| |||| ||||    
T  39370353 actatatagatcgggttataaa 39370332  T

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Target: chr2; HSP #50
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 313 - 403
Target Start/End: Original strand, 39388879 - 39388969
Alignment:
Q  313 tgtgatacgacaactggaaaagcttttaaaattgtctaatatatacaacattaacatgattaaaaatattcttaaagaattaagtagatca 403  Q
    ||||||| || | |||||||||| ||| |||||| |||  | ||||||||||||||||||||||||  ||  ||  |||||||||||||||    
T  39388879 tgtgatatgaaatctggaaaagcatttcaaattgactatgacatacaacattaacatgattaaaaacgtttctatggaattaagtagatca 39388969  T

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Target: chr2; HSP #51
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 692 - 754
Target Start/End: Complemental strand, 39458531 - 39458469
Alignment:
Q  692 ttcaaattgcttctcttttgatttaaagtcctcgacttggctttcgaaatgcttcttttttga 754  Q
    |||||||| |||||||||||||| ||| ||||  ||||| ||||| |||||||||| ||||||    
T  39458531 ttcaaattccttctcttttgattcaaaatccttcacttgtctttcaaaatgcttctgttttga 39458469  T

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Target: chr2; HSP #52
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 517 - 578
Target Start/End: Complemental strand, 39152755 - 39152694
Alignment:
Q  517 ttttcaataaacaagatgaataagaacatttacccgattctttttcttcatcaatatatttt 578  Q
    |||||||||||| |||  ||||| |||||||||| |||||| |||| ||||||| |||||||    
T  39152755 ttttcaataaactagacaaataaaaacatttacctgattctatttcctcatcaaaatatttt 39152694  T

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Target: chr2; HSP #53
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 206
Target Start/End: Original strand, 39197623 - 39197676
Alignment:
Q  153 gaaagtgttagattttattgattaataaacaagactaaaaatagttgcactaat 206  Q
    ||||||||||||| | |||||||| | || ||||||| ||||||||||||||||    
T  39197623 gaaagtgttagatctaattgattattgaataagactagaaatagttgcactaat 39197676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #54
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 359 - 412
Target Start/End: Complemental strand, 39215882 - 39215829
Alignment:
Q  359 aacattaacatgattaaaaatattcttaaagaattaagtagatcaggttgtaaa 412  Q
    |||||||||||||||||||||||| ||||| || || ||||||| |||| ||||    
T  39215882 aacattaacatgattaaaaatatttttaaacaactatgtagatcgggttataaa 39215829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #55
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 696 - 765
Target Start/End: Original strand, 39390292 - 39390361
Alignment:
Q  696 aattgcttctcttttgatttaaagtcctcgacttggctttcgaaatgcttcttttttgattcgagttcct 765  Q
    ||||||||| |||||| ||| |  ||||| ||||||||||| ||||||||| |||| ||||| |||||||    
T  39390292 aattgcttcacttttgttttgagctcctccacttggctttcaaaatgcttccttttagattccagttcct 39390361  T

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Target: chr2; HSP #56
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 517 - 570
Target Start/End: Complemental strand, 39459432 - 39459379
Alignment:
Q  517 ttttcaataaacaagatgaataagaacatttacccgattctttttcttcatcaa 570  Q
    |||||||||| | | ||||||||||||| |||||||||||| |||| |||||||    
T  39459432 ttttcaataagctaaatgaataagaacacttacccgattctgtttcctcatcaa 39459379  T

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Target: chr5 (Bit Score: 97; Significance: 3e-47; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 583 - 819
Target Start/End: Complemental strand, 33561065 - 33560829
Alignment:
Q  583 ttgacacaggatccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctctgctgactcaagtttatt 682  Q
    |||||| |||||||||| ||||||||||| ||  |||| |||||||| ||||||||||||||||| | | |||||| | ||||   ||||| |||| |||    
T  33561065 ttgacataggatccttgccttgtccttcacactgctttacttttaagctgagctccttcaccttttcatcgaacttgtactctttcgactccagttcatt 33560966  T
Q  683 ccatcgtccttcaaattgcttctcttttgatttaaagtcctcgacttggctttcgaaatgcttcttttttgattcgagttcctcctcctttgattttatg 782  Q
    ||||||| | | |||||| |||| ||||||||| |||||||| ||||| ||| | |||||||||| ||||||||||||||| ||||||||| |||| |||    
T  33560965 ccatcgtacctgaaattggttctgttttgatttgaagtcctcaacttgtcttgcaaaatgcttctcttttgattcgagttcttcctcctttaatttaatg 33560866  T
Q  783 tccctcacttgttcttcaaattccttctcctttgatt 819  Q
    ||| ||||||||||||| ||||||| ||| |||||||    
T  33560865 tccttcacttgttcttcgaattcctcctcttttgatt 33560829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 33562070 - 33561983
Alignment:
Q  19 catgtaagatgcaactgcatatttagat-gtagatatttaagctcttcatatttatagaaacatcagtaaatgatagtgacaataaga 105  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33562070 catgtaagatgcaactgcatatttagatagtagatatttaagctcttcatatttatagaaacatcagtaaatgatagtgacagtaaga 33561983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 494 - 583
Target Start/End: Complemental strand, 33561196 - 33561107
Alignment:
Q  494 agaggaacagttgtaaagaaattttttcaataaacaagatgaataagaacatttacccgattctttttcttcatcaatatattttttcct 583  Q
    ||||||||| || |||  ||||| ||||||||||| ||||||| ||||||||||||| ||||||||||| | ||||||  ||||||||||    
T  33561196 agaggaacacttataataaaattctttcaataaactagatgaagaagaacatttaccggattctttttccttatcaatgcattttttcct 33561107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 283 - 405
Target Start/End: Complemental strand, 33561348 - 33561225
Alignment:
Q  283 ataatccaaattagtttgacactttgtggatgtgatacgacaactggaaaagcttttaaaattgtctaatatatacaa-cattaacatgattaaaaatat 381  Q
    |||||||| |||||| ||| | | ||||| ||||||| || | | | |||||||||| |||||| | || | |||||| ||||||||||||||||||| |    
T  33561348 ataatccagattagtctgaaagtctgtgggtgtgatatgaaatcagtaaaagcttttcaaattgaccaagacatacaaacattaacatgattaaaaatgt 33561249  T
Q  382 tcttaaagaattaagtagatcagg 405  Q
      |||||| |||||||||||||||    
T  33561248 gtttaaaggattaagtagatcagg 33561225  T

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Target: chr6 (Bit Score: 66; Significance: 1e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 594 - 759
Target Start/End: Complemental strand, 16113339 - 16113174
Alignment:
Q  594 tccttgacttgtccttcaaaccacttttcttttaagttgagctccttcacctttgctttgaacttattctctgctgactcaagtttattccatcgtcctt 693  Q
    |||||||||||| |||||| |  ||| |||||||| |||||||||||| ||||| ||||||||| |||||||  ||| || ||||  ||||| ||| |||    
T  16113339 tccttgacttgtacttcaatctgcttctcttttaacttgagctccttctcctttactttgaactgattctcttttgattcgagttctttccaccgttctt 16113240  T
Q  694 caaattgcttctcttttgatttaaagtcctcgacttggctttcgaaatgcttcttttttgattcga 759  Q
    |||||||||| || |||||||| || | ||| ||||||||||| |||||||| |||||||||||||    
T  16113239 caaattgcttatcgtttgatttgaaatactcaacttggctttccaaatgcttattttttgattcga 16113174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 501 - 580
Target Start/End: Complemental strand, 16113495 - 16113416
Alignment:
Q  501 cagttgtaaagaaattttttcaataaacaagatgaataagaacatttacccgattctttttcttcatcaatatatttttt 580  Q
    |||||| || ||| |||||||||||||| |||||||| |||||| ||||||||||||||||| || ||||||| ||||||    
T  16113495 cagttgaaatgaatttttttcaataaactagatgaatgagaacacttacccgattctttttcctcgtcaatatgtttttt 16113416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 620 - 756
Target Start/End: Complemental strand, 19807846 - 19807710
Alignment:
Q  620 ttcttttaagttgagctccttcacctttgctttgaacttattctctgctgactcaagtttattccatcgtccttcaaattgcttctcttttgatttaaag 719  Q
    ||||||||| |||||||| || |||  | |||||||||||||||||  |||||| ||||  ||||| | | |||||| ||| ||||||||||||||  |     
T  19807846 ttcttttaacttgagctctttgaccagtactttgaacttattctcttttgactcgagttctttccacctttcttcaatttgattctcttttgatttgtat 19807747  T
Q  720 tcctcgacttggctttcgaaatgcttcttttttgatt 756  Q
    ||||||||||||||||| |  ||||||| ||||||||    
T  19807746 tcctcgacttggctttcaagttgcttctcttttgatt 19807710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 692 - 752
Target Start/End: Complemental strand, 19807732 - 19807672
Alignment:
Q  692 ttcaaattgcttctcttttgatttaaagtcctcgacttggctttcgaaatgcttctttttt 752  Q
    ||||| |||||||||||||||||| |||||||| |||||| ||||||| ||||||||||||    
T  19807732 ttcaagttgcttctcttttgatttgaagtcctcaacttggttttcgaattgcttctttttt 19807672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 523 - 570
Target Start/End: Complemental strand, 19807994 - 19807947
Alignment:
Q  523 ataaacaagatgaataagaacatttacccgattctttttcttcatcaa 570  Q
    |||||| |||||||||||||| |||||||||| ||||||| |||||||    
T  19807994 ataaactagatgaataagaacttttacccgatgctttttcctcatcaa 19807947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 687 - 757
Target Start/End: Complemental strand, 51575014 - 51574944
Alignment:
Q  687 cgtccttcaaattgcttctcttttgatttaaagtcctcgacttggctttcgaaatgcttcttttttgattc 757  Q
    |||||||||||||| |||||||||||||| |  ||||  ||||||||||| ||||||||||||| ||||||    
T  51575014 cgtccttcaaattgtttctcttttgatttgagttccttcacttggctttcaaaatgcttcttttctgattc 51574944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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