View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21239_low_10 (Length: 459)
Name: NF21239_low_10
Description: NF21239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21239_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 17 - 441
Target Start/End: Original strand, 17988157 - 17988581
Alignment:
| Q |
17 |
atggacatactgtatgacagcttgtttctacgcaaatacagcgtttgttaagttcctttgctgaaaacccggtgaagaattggaggcacaaggattgtgc |
116 |
Q |
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| T |
17988157 |
atggacatgctgtaagacagattgtttctacgcaaatacagagtttgttaagttcctttgctgaaaacccggtgaagaattggaggcacaaggattgtgc |
17988256 |
T |
|
| Q |
117 |
catatacttggtaatctctctttcaaccaagatagctggaactggttatgtctccataggtctagttgatttccaaagcttttttgaatttgtcattgtc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17988257 |
catatacttggtaatctctctttcaaccaagatagctggaaccggttatgtctccataggtctagttgatttccaaagcttttttgaatttgtcattgtc |
17988356 |
T |
|
| Q |
217 |
cctgagctgcaaagtttggatgtgaatgggtattcaatgcttaaggcaggtgcactcaaatattttactatgttcctgtctcaaatatcgaaagatgttg |
316 |
Q |
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| T |
17988357 |
cctgagctgcaaagtttggatgtgaatgggtattcaatgcttaaggcaggtgcactcaaatattttactatgttcctgtctcaaatatcaaaagatgttg |
17988456 |
T |
|
| Q |
317 |
cattgatgtttttaggagatttggtttgtttcattaacgcggagtcaaacgtggtttattcatatgctgcaatctgtattgagaaactcgtattggtaaa |
416 |
Q |
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|||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
17988457 |
cattgatgattttaggagatttggttcgtttcattaacgcggagtcaaacgtcgttcattcttatgctgcaatctgtattgagaaactcgtattggtaaa |
17988556 |
T |
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| Q |
417 |
agaagagggaggtaggcaacgctat |
441 |
Q |
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| T |
17988557 |
agaagagggaggtaggcaatgctat |
17988581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 38 - 405
Target Start/End: Complemental strand, 9752329 - 9751962
Alignment:
| Q |
38 |
ttgtttctacgcaaatacagcgtttgttaagttcctttgctgaaaacccggtgaagaattggaggcacaaggattgtgccatatacttggtaatctctct |
137 |
Q |
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|||||||| ||||| ||||| ||||||| || || ||| || ||| |||||| |||||||| | ||||||||||||| ||||| ||||| ||||||| |
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| T |
9752329 |
ttgtttctgcgcaagtacagagtttgttgagctcttttaatgcaaatccggtggcgaattggaaggacaaggattgtgcgatatatttggtggtctctct |
9752230 |
T |
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| Q |
138 |
ttcaaccaagatagctggaactggttatgtctccataggtctagttgatttccaaagcttttttgaatttgtcattgtccctgagctgcaaagtttggat |
237 |
Q |
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||||| |||| |||| ||| ||||||||||||| || ||| |||||| | |||||||||||||||| ||| |||||||||||| |||||| ||| |
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| T |
9752229 |
atcaacaaagaaggctgcaaccggttatgtctccacagatcttgttgatgttcaaagcttttttgaatctgtgattgtccctgagttgcaaaaggcagat |
9752130 |
T |
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| Q |
238 |
gtgaatgggtattcaatgcttaaggcaggtgcactcaaatattttactatgttcctgtctcaaatatcgaaagatgttgcattgatgtttttaggagatt |
337 |
Q |
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||||||| |||| ||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| || || |||| ||||||| |||| |
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| T |
9752129 |
gtgaatgagtatccaatgcttaaggcaggtgcactcaagttctttactatgttccgatctcaaatatcgaaagaagtagcgttgaggtttttacctgatt |
9752030 |
T |
|
| Q |
338 |
tggtttgtttcattaacgcggagtcaaacgtggtttattcatatgctgcaatctgtattgagaaactc |
405 |
Q |
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||||| ||||| || ||||||||||| || ||| |||| |||||||| | |||||||||||||||| |
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| T |
9752029 |
tggttcgtttccttgctgcggagtcaaatgttgttcattcttatgctgctagctgtattgagaaactc |
9751962 |
T |
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